Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq1325 571 7e-158 seq1658 538 4e-148 seq2002 502 3e-137 seq2892 89.7 6e-13 seq2515 89.7 6e-13 >seq1325 Length=385796 Score = 571 bits (632), Expect = 7e-158 Identities = 713/968 (74%), Gaps = 17/968 (2%) Strand=Plus/Minus Query 67839 AGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAA 67898 ||| || ||||| |||||||||| || || ||||| |||||||||||||||||||| || Sbjct 7970 AGCGGCTAGGTCTTGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAA 7911 Query 67899 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGAT 67958 ||| |||| | | || ||||| ||| | | || ||| |||||||| | Sbjct 7910 GTTAGCATGGTTAATGATATCAGCCCAAGTATGAATTACACGACCTTGACTATCAACTAC 7851 Query 67959 AGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGT 68018 ||| |||||||| ||||||||||| | |||||| ||||| || |||| ||| | ||||| Sbjct 7850 AGATTGGTTGAAATTGAAACCATTTAAGTTGAAGGCCATAGTACTAATACCTAAAGCAGT 7791 Query 68019 GAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTT 68078 ||||| ||||| || |||||||| ||||| | ||||||| | | ||||| |||||||| Sbjct 7790 AAACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAG-GTAAAGAACGAGAGTTGTT 7732 Query 68079 GAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTA 68138 ||| ||||| || ||||||| || ||||| || ||||| ||||| ||||| || || Sbjct 7731 GAAACTAGCATATTGAAAGATCAATCGGCCGAAATAACCATGAGCAGCTACAATATTATA 7672 Query 68139 AGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTC 68198 ||| ||||| ||||| | ||| ||||||| | || || ||| ||| |||||||| Sbjct 7671 AGTTTCTTCCTCTTGCCTGAATCTGTAACCCTCATTAGCAGATTCATTTTATGTGGTTTC 7612 Query 68199 ACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAA 68258 | | || |||||| |||| |||||||||||| ||||| | ||||| || | || Sbjct 7611 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTATAAAGAGAGCCTTCGAA 7552 Query 68259 TACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAA 68318 || ||||| || || | ||| | || || ||||| |||||||||||||| || ||||| Sbjct 7551 CACACCAGCTACACCTAACATGCGAAATGGATGCATAAGGATGTTGTGCTCAGCCTGGAA 7492 Query 68319 CACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACC 68378 || | ||| |||||||||||| ||| || || |||||||| | ||||| || || Sbjct 7491 TACAATCATAAAGTTGAAAGTACTAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCC 7432 Query 68379 TTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGC 68438 |||||| | | |||| || ||| || | | || |||||||| || || || ||||| Sbjct 7431 TTGACCAATTAGGTAGATCAAGAAAACAACAGTAGCCGCTGCAACCGGAGCTGAATATGC 7372 Query 68439 AACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGT- 68497 |||| |||||||| |||||||| ||||| | ||||||||| ||||| ||||| | Sbjct 7371 AACATCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATA 7312 Query 68498 --ATGCAAAGATACCAATCAGGAAGT---GAAAGATTACGAGTTGGAAAGGACCACCATT 68552 |||| | ||||| | |||| ||| ||| |||| ||||||| || || Sbjct 7311 ACATGC---TACACCAAGTAAAAAGTTTAGAACAATT---AGTTCATAAGGACCTCCGTT 7258 Query 68553 GTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGC 68612 ||| ||||||||||||| | ||||||||||| || ||||||||||| | || || || Sbjct 7257 GTATAACCACTCATCAACCGACGCTGCTTCCCATATTGGATAAAAGTGCAACCCTATAGC 7198 Query 68613 ATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGC 68672 ||| |||||| || ||||| ||||| || ||||| || || || || || || | Sbjct 7197 TGCAGAAGTAGGAATAATGGCACCCGAAATAATATTGTTTCCGTAAAGTAGAGACCCGGA 7138 Query 68673 AACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA 68732 |||| |||||||||||||||| || || || | |||||||| |||||||| | || || Sbjct 7137 AACAAGTTCACGAATACCATCAATATCTACTAGAGGAGCAGCAATGAAGGCTAAAATAAA 7078 Query 68733 -ACAGATGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAA 68790 ||||| ||||| | ||| || || |||||||||| || || ||||| |||| ||| Sbjct 7077 TACAGA-AGTTGCAGTCAATAAG-GTTGGGATCATCAAAACACCAAACCATCCAATATAA 7020 Query 68791 AGGCGGTT 68798 || | ||| Sbjct 7019 AGACTGTT 7012 >seq1658 Length=355568 Score = 538 bits (596), Expect = 4e-148 Identities = 720/994 (72%), Gaps = 24/994 (2%) Strand=Plus/Plus Query 67839 AGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAA 67898 ||| || ||||| ||||||||||| || || ||||| |||||||||||||||||||| | Sbjct 186930 AGCGGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 186989 Query 67899 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGAT 67958 ||| ||||| | | || ||||| ||| | || ||| |||||||| | Sbjct 186990 GTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTAC 187049 Query 67959 AGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGT 68018 ||| |||||||| ||||||||||| | |||||| ||||| || |||| ||| | ||| | Sbjct 187050 AGATTGGTTGAAATTGAAACCATTTAAGTTGAAGGCCATAGTACTAATACCTAAAGCAAT 187109 Query 68019 GAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTT 68078 ||||| ||||| || |||||||| ||||| | ||||||||| | ||||| |||| ||| Sbjct 187110 AAACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTAGTT 187169 Query 68079 GAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTA 68138 ||| | ||| || ||||||| || |||| || ||||| ||||| ||||| || || Sbjct 187170 GAAACTAGTATATTGAAAGATCAATCGGGCGAAATAACCATGAGCAGCTACAATATTATA 187229 Query 68139 AGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTC 68198 ||| ||||| ||||| ||||| ||||||| | || || ||| |||| |||||||| Sbjct 187230 AGTTTCTTCCTCTTGCCCGAATCTGTAACCCTCATTAGCAGATTCATTTTCTGTGGTTTC 187289 Query 68199 ACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAA 68258 | || || |||| | |||| |||||||||||| ||||| | ||||| | || || Sbjct 187290 CCTAATCAAACTAGAAATTACCAAGGAACCATGCATAGCACTAGAAAGAGAGCGGCCGAA 187349 Query 68259 TA--------CGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCT 68310 || | ||||| || || | ||| || || || ||||| |||||||||||||| Sbjct 187350 TACACCAGGTCACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCA 187409 Query 68311 GCTTGGAACACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAG 68370 || | ||| || | ||| |||||||||||||||| || | |||||||| | ||| | Sbjct 187410 GCCTAGAATACAATCATAAAGTTGAAAGTACCAGAGATTTCTAGAGGCATACCATCATAA 187469 Query 68371 AACGAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCA 68430 || |||||||| | || |||| || ||| || || | || ||||||| | || Sbjct 187470 AATCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCCGCTGCAATCAGAGCT 187529 Query 68431 GAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGT 68490 | ||||||||| |||||||| |||||||| ||||| | ||||||||| ||||| Sbjct 187530 AAATATGCAACAACAATCCAAGGGCGCATACCTAGACGGAAACTAAGTTCCCACTCACGA 187589 Query 68491 CCCATGT---ATGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCA 68547 ||||| | |||| | ||||| | ||||| | | | |||| |||||||| Sbjct 187590 CCCATATAACATGC---TACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCA 187646 Query 68548 CCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGAC-- 68605 || ||||| ||||||||||||| || ||||| || || ||||||||||| | | Sbjct 187647 CCGTTGTATAACCACTCATCAACCAACGCCGCTTCTCATATTGGATAAAAGTGCAACCCT 187706 Query 68606 -CAATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGT 68664 ||| |||| || |||||| || | ||| ||||| || || || || || || || Sbjct 187707 ACAACTGCA---AAAGTAGGAATAATGGTACCCGAAATAATATTCTTTCCGTAAAGTAGA 187763 Query 68665 GAACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCG 68724 || || | ||||||||||||||||||||| || || | | |||||||| |||||||| Sbjct 187764 GACCCGGAAACAGGTTCACGAATACCATCAATATCTAATAGAGGAGCAGCAATGAAGGCT 187823 Query 68725 ACGATGAA-ACAGATGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGCCGAACCAAC 68782 | || || ||||| ||||| | ||| || ||||||||||||| || || ||||| | Sbjct 187824 ATAATAAATACAGA-AGTTGCAGTCAATAAG-GTAGGGATCATCAAAACACCAAACCATC 187881 Query 68783 CAACGTAAAGGCGGTTCTCTGTGGAAGTCACCCA 68816 ||| ||||| ||||| || ||| ||| | ||| Sbjct 187882 CAATATAAAGACGGTTTTCAGTGCTAGTTATCCA 187915 >seq2002 Length=1023113 Score = 502 bits (556), Expect = 3e-137 Identities = 718/1007 (71%), Gaps = 3/1007 (0%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || |||||||| ||||| || || ||||||| || ||||||||| || | Sbjct 168444 ATTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 168385 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || |||| ||| ||||||| |||||| || || ||||| || || ||||||| Sbjct 168384 GATCTTGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAGAGAATATTTTTGGTGTAGA 168325 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | || || || || || ||||| ||||| | ||| || ||||| | |||||||| |||| Sbjct 168324 AAGTTTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAATGAAGTCATAGGCAC 168265 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | ||||| | ||| | ||| | | || | | ||| |||| | ||| | || || | Sbjct 168264 GTAGGTTCAAAGCCATACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTA 168205 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| |||||||||||||| ||||| | |||||| ||| |||| ||||| || || | Sbjct 168204 CAAATAACATAAAGAAATGTAACCAACATTTATTGGAAAAAGCAACGCCAAAAATTTGGG 168145 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 |||| |||||||| || || |||||||| ||||||||||| |||| || | || || | Sbjct 168144 ACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGGGTTGGGTTAAAAG 168085 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | ||| || ||||| ||||| |||||| | | | |||| ||||| ||| | |||| Sbjct 168084 CCCGGAATGTATTTGCCCCATCACCGTCTTCAAATAAATTATTTTCTACGGTAGCGCCAT 168025 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| || | || | || | |||| | ||| || || |||||||||||||| || | Sbjct 168024 GAATAGCGCATAGTAGAGCGGCGCCCAATACACCGGCAACTCCCATCATATGAAATGGAT 167965 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 ||| ||||| ||||| || ||||| | ||||||| ||||||||| || |||| | | Sbjct 167964 TCAGTGTCCAATTATGAAACCCTTGAAAAAAGAGAATGAATCGAAATATAGCTGCTATAC 167905 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 | ||| || || || ||||||| || ||||| || || || || || || ||| || Sbjct 167904 CAAAACTAGGTGCAAAGAACCAACCAGACTGACCTAGTGGATAAATTAGGAATACAGAAA 167845 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA- 67244 |||||||||| || |||||||| || || || ||||| || || || | | || || Sbjct 167844 CAAAAACAGCAATTGGACCAGATAATGCGATTGCATTATAAGGGCGCA-ATTGAACGGAT 167786 Query 67245 CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCC 67304 || || || || || || || | ||| ||||| || || |||||||| || || || || Sbjct 167785 CGAGCAAGCTCGAATTGACGTAACATAAAACCTATAAGTGCGAAAGCACCATGAAGAGCA 167726 Query 67305 ACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGA 67364 |||||| |||| || || || | ||| ||| || || || || || | || ||| Sbjct 167725 ACAAAAGTCCACAGGCCGCCTAATTGACACCAACGAGTAAAGTCTCCTTGTGCTTCGGGA 167666 Query 67365 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGTG 67424 ||||| |||| | | ||| || | | | || |||||| || || || | ||| || Sbjct 167665 CCCCACAGTAACAATAAAGAGTGGGCTAAACTATTAGCAGGAGTAGAAACTGTCGCGGTT 167606 Query 67425 AGAAAATTAGCACCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTGACA 67484 | ||||| ||| || | |||| | || | ||| || || ||||| || ||| Sbjct 167605 AAGAAATTGCAACCTTCCAAATAAGAACTGGCCAATCCATGGGTATACCATGAAGTTACA 167546 Query 67485 AACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGTAGT 67544 || || ||||| |||| ||| || || | || | ||||||| |||| || | ||| Sbjct 167545 AAGGTTGTACCTGTAAACCAACCTCCTAAGGCGAAATAAGCA-CACGAAAGAGCAATAGC 167487 Query 67545 CCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591 ||||||||||| ||||| || || || || | | ||||||||| Sbjct 167486 CCAGACCAACCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATC 167440 >seq2892 Length=679138 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 ||||||| |||||||| |||||||||||||||| ||||||| ||| ||||| || ||| Sbjct 577558 CTCCCCAAGTAGGATTCGAACCTACGACCAATCAGTTAACAGCCGACCGCTCTACCACTG 577617 Query 35571 AGCTACTGAGGA 35582 |||||||||||| Sbjct 577618 AGCTACTGAGGA 577629 >seq2515 Length=817576 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 ||||||| |||||||| |||||||||||||||| ||||||| ||| ||||| || ||| Sbjct 692118 CTCCCCAAGTAGGATTCGAACCTACGACCAATCAGTTAACAGCCGACCGCTCTACCACTG 692177 Query 35571 AGCTACTGAGGA 35582 |||||||||||| Sbjct 692178 AGCTACTGAGGA 692189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572032855001160