Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq958 114 2e-20 seq2360 109 1e-18 seq1925 109 1e-18 seq2770 105 1e-17 seq758 104 4e-17 seq1558 102 1e-16 seq2306 96.9 6e-15 seq2371 84.2 4e-11 >seq958 Length=433838 Score = 114 bits (126), Expect = 2e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| || ||||||| ||| || | ||| || | ||||||||||| || || | | Sbjct 311947 AATGTTGTAGTCGGCTAAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGACG 312006 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||||| || || || || |||||||| || || || |||| ||| | ||| || || Sbjct 312007 TTGTTGGTCTGGTGGGATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGT 312066 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| || || || |||||||| ||||| |||||||| ||||| ||||| || || || || Sbjct 312067 ATCCGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTG 312126 Query 193358 CATTTT 193363 |||||| Sbjct 312127 CATTTT 312132 >seq2360 Length=898569 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| | || || |||| ||||| || | || || || || || || Sbjct 281216 ATACCACCTCTGAGGCGGAGGACCAAATGCAGGGTTGATTCCTTTTGGATGTTGTAATCA 281157 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || || ||| || | || || || ||||| || | ||||| || ||||| Sbjct 281156 GCCAAAGTCCTGCCATCCTCCAGCTGCTTCCCAGCAAAGATAATCCTCTGCTGGTCAGGT 281097 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || |||||||| || || || || | ||| ||| ||||| || ||| Sbjct 281096 GGAATGCCCTCCTTATCTTGAATCTTCGTCTTCACATTGTCAATTGTATCCGAGCTTTCA 281037 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || |||||||| || || ||||| || ||||| |||||||| Sbjct 281036 ACTTCTAGGGTGATAGTTTTCCCAGTAAGCGTCTTAACAAAGATTTGCAT 280987 >seq1925 Length=318408 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||| | || || ||||| || | || | |||||| || || || || Sbjct 245386 ATGCCACCTCTAAGACGGAGAACCAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCA 245327 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | |||||||||||||| || || ||||| ||||| || Sbjct 245326 GCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCTGGG 245267 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| ||||||||||| | ||| ||| ||||| || ||| Sbjct 245266 GGAATACCTTCCTTGTCTTGGATTTTGGTTTTAACATTGTCAATTGTATCAGAGCTTTCA 245207 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| || || || || || || ||||| || ||||| Sbjct 245206 ACCTCAAGGGTGATAGTCTTCCCAGTGAGGGTCTTAACAAAGATCTGCAT 245157 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||| || ||||| || || || | || | ||| || || || || || Sbjct 245158 ATGCCACCTCTTAAACGAAGAACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCA 245099 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | ||| ||||| ||||| || || ||||| || || || Sbjct 245098 GCAAGAGTGCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGG 245039 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| ||||||||||| | ||| ||| || || ||| ||| Sbjct 245038 GGAATACCTTCCTTGTCTTGAATTTTGGTTTTGACATTGTCAATGGTGTCAGAATTCTCG 244979 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| || || || || || || ||||| || ||||| Sbjct 244978 ACCTCAAGGGTGATAGTCTTCCCAGTGAGGGTCTTAACAAAAATCTGCAT 244929 Score = 98.7 bits (108), Expect = 2e-15 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || |||||||| || || || || ||||| | || | ||| || ||| || Sbjct 245621 AATTTGCATTCCACCTCTTAAACGGAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTT 245562 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || | | || | || || | || ||||| ||||| || | ||||||||| Sbjct 245561 GTAATCAGCAAGGGTACGCCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAGTCTCTGTTG 245502 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || ||||| || ||||| ||||||||||| | ||| ||| || ||||| Sbjct 245501 GTCTGGGGGAATGCCTTCCTTGTCTTGAATTTTGGTTTTGACATTGTCAATGGTGTCGGA 245442 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || || || || || || || ||||| || ||||| Sbjct 245441 GCTTTCAACCTCAAGGGTGATGGTCTTCCCAGTGAGGGTCTTAACAAAAATCTGCAT 245385 Score = 93.3 bits (102), Expect = 8e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || || || || || |||||||| || ||||| || |||||||| |||||||| || Sbjct 245995 TCCTCCAACTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGAGGAATTCCTTCCTTG 245936 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || ||||| || || || | ||| ||||| || || ||| || || | || || Sbjct 245935 TCCTGTATCTTAGTCTTGACATTATCGATAGTGTCTGAGCTCTCGACCTCCAAGGTGATG 245876 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || | || || ||||||||||||||| Sbjct 245875 GTTTTCCCAGTCAAGGTCTTAACAAATATTTGCATT 245840 >seq2770 Length=737149 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 |||||||| || || || | | ||| ||||| || || || || ||||||||||| ||| Sbjct 636578 TGTTTTCCAGCGAAGATCAGACGCTGCTGATCTGGGGGAATCCCCTCTTTATCTTGAATT 636637 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 ||||| || | ||| ||| ||||| ||| ||| || || ||||| || | ||| || Sbjct 636638 TTGGTCTTAACATTATCAATTGTATCAGAACTCTCGACCTCGAGAGTCATGGATTTGCCA 636697 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| ||||| |||||||| Sbjct 636698 GTTAGGGTTTTGACAAAAATTTGCAT 636723 >seq758 Length=475707 Score = 104 bits (114), Expect = 4e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || ||||||| ||| || | || || | || |||||||| ||||| | | Sbjct 367622 ATGTTGTAGTCGGCTAAAGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAAATGAGGCGT 367681 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||| || || || ||||||||||| ||||| || || | ||| | ||| || || Sbjct 367682 TGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATCTTTGCTTTGACATTGTCGATTGTG 367741 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || || || || ||||| ||||| |||||||| ||||| ||||| || || || ||| Sbjct 367742 TCCGAGGATTCTACCTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGC 367801 Query 193359 ATTTT 193363 ||||| Sbjct 367802 ATTTT 367806 >seq1558 Length=1070493 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| || | ||||| ||||| || | || | ||| || || || ||||||| Sbjct 239379 ACCACCCCTGAGACGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 239320 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || | || || | ||||||||||| || || | | ||| || || ||||| Sbjct 239319 GAGAGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGAGG 239260 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || ||||| || ||||| || || || || | ||| || || || || || ||||| Sbjct 239259 GATGCCTTCCTTGTCTTGGATCTTAGTCTTCACATTGTCGATGGTGTCTGAGGATTCAAC 239200 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| ||||| ||||| || ||||| ||||| || ||||| ||||| || Sbjct 239199 CTCTAGGGTTATTGTTTTCCCAGTTAGGGTTTTCACGAATATCTGCATCTT 239149 >seq2306 Length=232912 Score = 96.9 bits (106), Expect = 6e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | || || || |||| ||| | ||| | ||| || || || ||||| Sbjct 177012 ATACCACCACGCAGACGGAGCACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCA 177071 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | || |||||||| || || || |||||||| || || Sbjct 177072 GCAAGGGTGCGCCCATCTTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGTTGGTCTGGG 177131 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || ||||| || || | || | ||| |||||||||||| ||| Sbjct 177132 GGAATACCCTCCTTGTCTTGAATCTTAGACTTGACATTGTCAATAGTATCGGAGCTCTCG 177191 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || || || || || || || || || ||||| ||||||||| Sbjct 177192 ACTTCGAGGGTGATGGTCTTCCCAGTGAGAGTCTTGACAAAGATTTGCATT 177242 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||||||||| || || | || || || || || || |||||||| || ||||| || Sbjct 177552 TGTTTTCCGGCGAAGATCAGCCTTTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATC 177611 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || || || | ||| ||| || || ||| |||||| || ||||| || || || || Sbjct 177612 TTAGTCTTGACATTGTCAATGGTGTCAGAACTCTCAACCTCGAGAGTGATGGTCTTTCCA 177671 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| |||||||| Sbjct 177672 GTAAGGGTCTTCACAAAGATTTGCAT 177697 >seq2371 Length=888473 Score = 84.2 bits (92), Expect = 4e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||| |||| || || | | | ||||||| || | || |||||||| || || ||| Sbjct 99631 TGCTTTTCGGCGAAGATGAGACGCAGTTGATCGGGTTGAATGCCTTCTTTGTCATGGATT 99572 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | || | || ||| ||||| || ||||| || || || || |||||||| Sbjct 99571 TTAGCCTTGACGTTGTTAATGGTATCACTAGTTTCAACCTCAAGGGTGATGGTTTTACCC 99512 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || ||||| ||||||||||||||||| Sbjct 99511 GTAAGAGTTTTCACAAATATTTGCATTTT 99483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899620516766160