Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2659 122 1e-22 seq1925 104 3e-17 seq2448 96.9 5e-15 seq958 91.5 2e-13 seq2306 89.7 8e-13 seq758 84.2 3e-11 >seq2659 Length=772501 Score = 122 bits (134), Expect = 1e-22 Identities = 366/561 (65%), Gaps = 10/561 (2%) Strand=Plus/Minus Query 18149 TATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTA 18208 || || | ||| ||||| ||| || | ||||| |||| ||||| | ||||| Sbjct 20967 TACAACAGACAAGCAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAG 20908 Query 18209 AACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTA 18268 || ||||| || ||||||| || | ||||| ||||| || || || ||||| | Sbjct 20907 AAGGTTAAACCCGGCATTAACCCACGCTTTTTAAGCCAGAAGATGGAGCAAAAACTCCCG 20848 Query 18269 GAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTA 18328 || ||||| || || ||||| || || || || ||||| || |||||||| || ||| Sbjct 20847 GAGAAGAAAATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAA--TG-ATTC- 20792 Query 18329 TTGCTCAGT--ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCT 18386 ||| | | ||||| | ||||| || | | | ||| || ||| | | Sbjct 20791 -TGCACCATCAATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTT 20733 Query 18387 CTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACA 18446 | || ||| ||| | || ||| || |||||||| |||||||| || | | | Sbjct 20732 CAATTGCACGAAAAAGATGGGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAGAA 20673 Query 18447 AAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAG 18506 ||| ||||||||||| || ||| |||| || || || || || | ||| || | | || Sbjct 20672 GAGAGTACATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAG 20613 Query 18507 CCTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGT 18566 | || | | || | ||| | |||||| | | | |||||| |||||| |||| Sbjct 20612 CTTCAGCAACCTGGACCTCTTTCATGAATCTTCCGGCGAGATTCTCGAGAACTATGCCGT 20553 Query 18567 CAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCAT-TATCCTTGAGA 18625 ||| | ||||| || || | | | | |||||||| | ||| | || ||| Sbjct 20552 CAGATGCGGCGAAGAAGGCAAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGA 20493 Query 18626 TTGTT--CCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATG 18683 ||| ||| | | | ||||| ||| ||||| |||||||| | ||||| || || | Sbjct 20492 CGGTTTCCCAGTGACGAACATCTTGTGAAAGATCGACTTCTTCGGCAGTCCAGAACGAAG 20433 Query 18684 ATTCGGCCTGTTTGTACATTT 18704 ||| || | ||||||||||| Sbjct 20432 CTTCAGCTTTTTTGTACATTT 20412 >seq1925 Length=318408 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | || || |||||||| |||||||| || || || || || || Sbjct 245612 AATGCAAATTTTCGTCAAGACTTTGACTGGGAAAACTATCACTTTGGAGGTTGAGAGCTC 245671 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || || || || ||| || || ||||| || ||||| || ||||| || Sbjct 245672 AGACACCATCGACAATGTCAAGGCTAAGATTCAGGATAAGGAGGGCATTCCCCCAGATCA 245731 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||||||| | ||| || ||||||||||| ||| || || | |||| || || Sbjct 245732 GCAAAGATTGATCTTTGCAGGGAAGCAGCTCGAGGATGGGAGGACCCTTGCAGACTACAA 245791 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || ||| ||| | || ||||| || ||| | | |||||||| || Sbjct 245792 CAT-TCAAAAGGAGTCTACACTTCACTTGGTGCTTCGTTTAAGAGGAGG 245839 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| |||| || |||||||| ||||| || || || || ||||| || Sbjct 245840 AATGCAAATATTTGTTAAGACCTTGACTGGGAAAACCATCACCTTGGAGGTCGAGAGCTC 245899 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || || || | ||| ||||| || || ||||| || ||||| || || Sbjct 245900 AGACACTATCGATAATGTCAAGACTAAGATACAGGACAAGGAAGGAATTCCTCCTGACCA 245959 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 || || ||||||| ||| ||||||||| | || || Sbjct 245960 GCAGAGGTTGATTTTTGCTGGTAAGCAGTTGGAGGA 245995 >seq2448 Length=870776 Score = 96.9 bits (106), Expect = 5e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || || | ||||| | ||||| ||||| || || ||||| |||||| Sbjct 350292 AATATGCAGATTTTCGTGAAAACCCTAACTGGTAAAACCATAACCTTAGATGTCGAATCA 350351 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | || || || |||| || || ||||| ||||||||||| || ||||| Sbjct 350352 TCCGACACAATCGACAATGTCAAAATCAAGATCCAAGACAAAGAAGGCATCCCACCAGAT 350411 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | || || | ||| || || || | |||||| ||||| | ||||||| Sbjct 350412 CAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTAC 350471 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || || || | ||||||||||| ||| Sbjct 350472 AACATTCAGAAGGAATCCACGCTTCATTTGGTG 350504 >seq958 Length=433838 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || || | ||||| | || || ||||| || || ||||||||||| Sbjct 312132 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATCC 312073 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| || || || ||| || || || || ||||||||||| || ||||| Sbjct 312072 TCGGATACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCACCAGAC 312013 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | | || | ||||| || |||||||||||| | | |||||| | || || Sbjct 312012 CAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACTTTAGCCGACTAC 311953 Query 156000 AATAT 156004 || || Sbjct 311952 AACAT 311948 >seq2306 Length=232912 Score = 89.7 bits (98), Expect = 8e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || | ||||| || || || || | |||||||| || Sbjct 177242 AATGCAAATCTTTGTCAAGACTCTCACTGGGAAGACCATCACCCTCGAAGTCGAGAGCTC 177183 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| |||| || || || ||| || ||||| || || || || || ||||| || Sbjct 177182 CGATACTATTGACAATGTCAAGTCTAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCA 177123 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| || ||||| | ||||| ||||||||||||||| Sbjct 177122 ACAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAAGAT 177086 >seq758 Length=475707 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || || | ||||| | || || ||||| || || |||| || ||| Sbjct 367806 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTAGAATCC 367747 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | || || || ||| || || ||||| |||||||| || || ||||| Sbjct 367746 TCGGACACAATCGACAATGTCAAAGCAAAGATCCAAGACAAAGAAGGAATCCCACCAGAC 367687 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | | |||| ||||| |||||||||||||| | | |||||| | || || Sbjct 367686 CAACAACGCCTCATTTTCGCCGGAAAGCAGCTCGAAGACGGCCGCACTTTAGCCGACTAC 367627 Query 156000 AATATATCCAAAGAGGCGACGCTTCA 156025 || || || || |||| ||||| Sbjct 367626 AACATCCAGAAGGAATCGACTCTTCA 367601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731844435870800