Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2448 140 6e-28 seq2360 113 9e-20 seq1925 113 9e-20 seq958 105 1e-17 seq758 102 2e-16 seq2770 93.3 8e-14 seq2306 93.3 8e-14 seq1558 89.7 1e-12 seq2659 87.8 4e-12 seq2628 84.2 4e-11 >seq2448 Length=870776 Score = 140 bits (154), Expect = 6e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || ||||| | | ||||| | |||| ||||||||||| |||||||||||||| | Sbjct 350476 ATGTTGTAATCTGCAAGTGTTCTTCCATCTTCCAATTGTTTCCCAGCAAAGATTAAGCGT 350417 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 |||||||| ||||| || |||||||| ||||| || || |||| ||||| || | Sbjct 350416 TGTTGATCTGGTGGGATGCCTTCTTTGTCTTGGATCTTGATTTTGACATTGTCGATTGTG 350357 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || ||||| || |||| || |||||||||||||||| ||||| | || |||||| Sbjct 350356 TCGGATGATTCGACATCTAAGGTTATGGTTTTACCAGTTAGGGTTTTCACGAAAATCTGC 350297 Query 192535 ATTTT 192539 || || Sbjct 350296 ATATT 350292 >seq2360 Length=898569 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| || || | || ||||| | || | || || ||| || |||||| Sbjct 281216 ATACCACCTCTGAGGCGGAGGACCAAATGCAGGGTTGATTCCTTTTGGATGTTGTAATCA 281157 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || | |||| |||| || || ||||||||||| | ||||| || |||||| Sbjct 281156 GCCAAAGTCCTGCCATCCTCCAGCTGCTTCCCAGCAAAGATAATCCTCTGCTGGTCAGGT 281097 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || |||||||| || || | || ||||| || | ||| || ||| Sbjct 281096 GGAATGCCCTCCTTATCTTGAATCTTCGTCTTCACATTGTCAATTGTATCCGAGCTTTCA 281037 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| || || ||||| ||||| | || |||| ||| || ||||| Sbjct 281036 ACTTCTAGGGTGATAGTTTTCCCAGTAAGCGTCTTAACAAAGATTTGCAT 280987 >seq1925 Length=318408 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||||||||| | || | || | || | |||||| ||| || |||||| Sbjct 245386 ATGCCACCTCTAAGACGGAGAACCAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCA 245327 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| || | ||||| || |||||||| || ||||| ||||| || Sbjct 245326 GCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCTGGG 245267 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| ||||| |||| ||||| || | ||| || ||| Sbjct 245266 GGAATACCTTCCTTGTCTTGGATTTTGGTTTTAACATTGTCAATTGTATCAGAGCTTTCA 245207 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || ||||| | || |||| ||| |||||||| Sbjct 245206 ACCTCAAGGGTGATAGTCTTCCCAGTGAGGGTCTTAACAAAGATCTGCAT 245157 Score = 111 bits (122), Expect = 3e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 192382 TCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTA 192441 || ||||| || ||||||||||| || || ||||| || ||||| || |||||||| || Sbjct 245995 TCCTCCAACTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGAGGAATTCCTTCCTTG 245936 Query 192442 TCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATG 192501 || ||||| ||| | || |||||| |||| ||||| || || || | || ||| Sbjct 245935 TCCTGTATCTTAGTCTTGACATTATCGATAGTGTCTGAGCTCTCGACCTCCAAGGTGATG 245876 Query 192502 GTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| ||||| || || |||| |||||| |||||| Sbjct 245875 GTTTTCCCAGTCAAGGTCTTAACAAATATTTGCATT 245840 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| | ||| | || | ||| | || | ||| || || || |||||| Sbjct 245614 ATTCCACCTCTTAAACGGAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCA 245555 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || | || || | || || ||||||||||| | ||||||||| || || Sbjct 245554 GCAAGGGTACGCCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAGTCTCTGTTGGTCTGGG 245495 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| ||||| |||| ||||| || | || || ||| Sbjct 245494 GGAATGCCTTCCTTGTCTTGAATTTTGGTTTTGACATTGTCAATGGTGTCGGAGCTTTCA 245435 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | || |||| ||| |||||||| Sbjct 245434 ACCTCAAGGGTGATGGTCTTCCCAGTGAGGGTCTTAACAAAAATCTGCAT 245385 Score = 93.3 bits (102), Expect = 8e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| | ||| | || | || | || | ||| || ||| || |||||| Sbjct 245158 ATGCCACCTCTTAAACGAAGAACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCA 245099 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| || | ||| || ||||||||||| || ||||| || || || Sbjct 245098 GCAAGAGTGCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGG 245039 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| ||||| |||| ||||| || | || || ||||| Sbjct 245038 GGAATACCTTCCTTGTCTTGAATTTTGGTTTTGACATTGTCAATGGTGTCAGA--ATTCT 244981 Query 192487 --ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || ||||| | || |||| ||| |||||||| Sbjct 244980 CGACCTCAAGGGTGATAGTCTTCCCAGTGAGGGTCTTAACAAAAATCTGCAT 244929 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||||||||| | || | || | || | ||| || |||||| || ||| Sbjct 244930 ATCCCTCCTCTAAGACGGAGAACAAGGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCA 244871 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| |||| |||| || || ||||||||||| | | ||| || || || Sbjct 244870 GCGAGCGTTCGGCCATCCTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGG 244811 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || |||||||| || || | || ||||| || | || || || Sbjct 244810 GGAATTCCCTCCTTATCTTGAATCTTCGTCTTAACATTGTCGATGGTGTCAGAACTCTCA 244751 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| |||||||| || || | || |||| || || ||||| Sbjct 244750 ACCTCGAGAGTTATGGTTTTTCCGGTAAGAGTCTTAACGAAGATTTGCAT 244701 >seq958 Length=433838 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | |||||| | || | || | ||| | || || || || || || | Sbjct 311902 ACCACCACGAAGACGAAGAACAAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCGGC 311961 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||| || || |||| || | ||||| || || ||||| | | ||||| || ||||| Sbjct 311962 TAAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGG 312021 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||| || || || || ||| ||||| || | ||| || ||||| || Sbjct 312022 GATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTATCCGAGGATTCGAC 312081 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 |||||| || ||||||||||| |||| ||||| | || ||||||||||| Sbjct 312082 TTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 312132 >seq758 Length=475707 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | |||||| | || | || | ||| | || || ||| || || || | Sbjct 367576 ACCACCACGAAGACGAAGAACAAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCGGC 367635 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||| || || | || || | || || || || || || | | ||||| || ||||| Sbjct 367636 TAAAGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAAATGAGGCGTTGTTGGTCTGGTGG 367695 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||||||||| ||||| || || ||| ||||| || | || || |||||||| Sbjct 367696 GATTCCTTCTTTGTCTTGGATCTTTGCTTTGACATTGTCGATTGTGTCCGAGGATTCTAC 367755 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| || ||||||||||| |||| ||||| | || ||||||||||| Sbjct 367756 CTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 367806 >seq2770 Length=737149 Score = 93.3 bits (102), Expect = 8e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| || |||| || || ||| |||| || | ||| || || || |||||||||||| Sbjct 635912 ATATTGTAGTCAGCCAAGGTGCGTCCATCCTCAAGTTGCTTCCCGGCGAAGATTAATCTC 635971 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || || | || || ||||| || || |||||| |||| |||||| | || | Sbjct 635972 TGCTGGTCCGGGGAAATCCCCTCTTTGTCCTGGATTTTAGTTTTCACATTATCGACAGTA 636031 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAA 192523 ||||| | || || || || ||||| || ||||| || || |||| Sbjct 636032 TCTGAGCTCTAAACCTCCAGGGTGATGGTCTTCCCAGTCAAAGTCTTAA 636080 Score = 91.5 bits (100), Expect = 3e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 ||||||| | | ||||| ||| || | ||||| ||||| ||||| | | ||| | Sbjct 636546 TATAATCCGCAAGGGTTCGGCCATTCTCAAGCTGTTTTCCAGCGAAGATCAGACGCTGCT 636605 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 |||| || || || || ||||||||||| ||||| | || |||||| || | ||| | Sbjct 636606 GATCTGGGGGAATCCCCTCTTTATCTTGAATTTTGGTCTTAACATTATCAATTGTATCAG 636665 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || || || ||||| |||| ||| ||||||| ||||| | ||| || ||||| Sbjct 636666 AACTCTCGACCTCGAGAGTCATGGATTTGCCAGTTAGGGTTTTGACAAAAATTTGCAT 636723 >seq2306 Length=232912 Score = 93.3 bits (102), Expect = 8e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||| | || | || | |||| ||| || || || ||||||| Sbjct 176330 ACCACCACGGAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGC 176389 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || |||| || | || |||||||||||||| || ||||| || || || || Sbjct 176390 AAGGGTACGCCCATCCTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGGGG 176449 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || || || || || ||| ||||||||| || | ||| || || || Sbjct 176450 GATCCCCTCCTTGTCCTGAATCTTAGCCTTTACATTATCAATTGTATCCGAGCTCTCAAC 176509 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || ||||| ||||| || ||||| || || || | ||| ||||||||| Sbjct 176510 CTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAAATCTGCATT 176558 >seq1558 Length=1070493 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 192391 TGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATT 192450 ||||| || || ||||| | | ||| || || || || || ||||| || ||||| || Sbjct 239297 TGTTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATC 239238 Query 192451 TTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 192510 ||| | || ||||| || | ||||| ||||| || ||||| || || ||||| ||| Sbjct 239237 TTAGTCTTCACATTGTCGATGGTGTCTGAGGATTCAACCTCTAGGGTTATTGTTTTCCCA 239178 Query 192511 GTTAATGTTTTAATAAATATCTGCATTTT 192539 |||| ||||| | ||||||||||| || Sbjct 239177 GTTAGGGTTTTCACGAATATCTGCATCTT 239149 >seq2659 Length=772501 Score = 87.8 bits (96), Expect = 4e-12 Identities = 162/237 (68%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 49823 ACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 49882 ||| ||||| ||| ||| | || ||||| | ||||| | || || || ||||| Sbjct 20959 ACAAGCAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAA 20900 Query 49883 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 49942 || |||||||| || | |||||||||||| || || || |||||| | || ||||| Sbjct 20899 ACCCGGCATTAACCCACGCTTTTTAAGCCAGAAGATGGAGCAAAAACTCCCGGAGAAGAA 20840 Query 49943 TATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAA 50002 || || || ||||| ||||| || |||| || | |||| | ||| || | Sbjct 20839 AATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAA---TGATTCTGCACCATC 20783 Query 50003 TATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGC 50059 |||||| | ||||||||| || || || || | | |||| ||| |||| || || Sbjct 20782 AATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGC 20726 >seq2628 Length=130910 Score = 84.2 bits (92), Expect = 4e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 49823 ACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 49882 ||| ||||||||| |||| || |||||||| ||||||| || || | ||||||| Sbjct 123099 ACAGGCAAAATCACAGTGTAGGCCTTCGTCCCTTGATATAAGCTCGTTTGAATAAGTTAA 123158 Query 49883 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATAT 49918 || ||||| | ||||||||||||||||||||||| Sbjct 123159 ACCAGGCATCATGCCTCTCTTTTTAAGCCAAAATAT 123194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984441995072550