Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2448 141 2e-28 seq1925 129 1e-24 seq758 118 2e-21 seq958 111 3e-19 seq2360 100 5e-16 seq1558 100 5e-16 seq2659 87.8 3e-12 seq2770 86.0 1e-11 seq2306 86.0 1e-11 seq2628 84.2 4e-11 >seq2448 Length=870776 Score = 141 bits (156), Expect = 2e-28 Identities = 174/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 |||| |||| || | |||||| | || ||||| | || | || || ||| || | Sbjct 350529 TCATGGTACCCCCACGAAGTCGAAGCACCAAATGAAGCGTGGATTCCTTCTGAATGTTGT 350470 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||||| | | || | | || ||||||||||| |||||||| ||||| | ||||| | Sbjct 350469 AATCTGCAAGTGTTCTTCCATCTTCCAATTGTTTCCCAGCAAAGATTAAGCGTTGTTGAT 350410 Query 171955 CAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACG 172014 | ||||| || |||||||| ||||| || || |||| ||||| || || || || | Sbjct 350409 CTGGTGGGATGCCTTCTTTGTCTTGGATCTTGATTTTGACATTGTCGATTGTGTCGGATG 350350 Query 172015 ATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 |||| || |||| || |||||||||||||||| ||||| | ||| |||||||| || Sbjct 350349 ATTCGACATCTAAGGTTATGGTTTTACCAGTTAGGGTTTTCACGAAAATCTGCATATT 350292 >seq1925 Length=318408 Score = 129 bits (142), Expect = 1e-24 Identities = 139/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || || |||| |||| || |||| ||||| || |||||||||||||| || || Sbjct 246023 AATGTTGTAGTCTGCCAAAGTGCGCCCGTCCTCCAACTGCTTACCAGCAAAAATCAACCT 245964 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| |||||||| || |||||||| || || ||||| ||| | || |||||| ||||| Sbjct 245963 CTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGTATCTTAGTCTTGACATTATCGATAGT 245904 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||||| || || || | || |||||||| ||||| || || |||| ||||| || Sbjct 245903 GTCTGAGCTCTCGACCTCCAAGGTGATGGTTTTCCCAGTCAAGGTCTTAACAAATATTTG 245844 Query 172067 CATT 172070 |||| Sbjct 245843 CATT 245840 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| | || | || | ||| | || | ||| || ||| || ||||| Sbjct 245614 ATTCCACCTCTTAAACGGAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCA 245555 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || |||| || | || || |||||||| || | |||||||||||| || Sbjct 245554 GCAAGGGTACGCCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAGTCTCTGTTGGTCTGGG 245495 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| ||||| |||| ||||| || || || || ||| Sbjct 245494 GGAATGCCTTCCTTGTCTTGAATTTTGGTTTTGACATTGTCAATGGTGTCGGAGCTTTCA 245435 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || ||||| | || |||| || |||||||| Sbjct 245434 ACCTCAAGGGTGATGGTCTTCCCAGTGAGGGTCTTAACAAAAATCTGCAT 245385 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||||||| || | || | || | || | |||||| || || ||||| Sbjct 245386 ATGCCACCTCTAAGACGGAGAACCAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCA 245327 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || | || || | ||||| || ||||| || || ||||| || || || Sbjct 245326 GCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCTGGG 245267 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| ||||| |||| ||||| || ||||| || ||| Sbjct 245266 GGAATACCTTCCTTGTCTTGGATTTTGGTTTTAACATTGTCAATTGTATCAGAGCTTTCA 245207 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || || ||||| | || |||| || |||||||| Sbjct 245206 ACCTCAAGGGTGATAGTCTTCCCAGTGAGGGTCTTAACAAAGATCTGCAT 245157 >seq758 Length=475707 Score = 118 bits (130), Expect = 2e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || || || | ||||| || |||| || | || || || || ||||| | | Sbjct 367622 ATGTTGTAGTCGGCTAAAGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAAATGAGGCGT 367681 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 |||||||| ||||| ||||||||||| ||||| || || ||| ||||| || || Sbjct 367682 TGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATCTTTGCTTTGACATTGTCGATTGTG 367741 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || |||||||| ||||| || ||||||||||| |||| ||||| | ||| |||||| Sbjct 367742 TCCGAGGATTCTACCTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGC 367801 Query 172068 ATTTT 172072 ||||| Sbjct 367802 ATTTT 367806 >seq958 Length=433838 Score = 111 bits (122), Expect = 3e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || || || | ||||| || | || || | ||||| || || || || | | Sbjct 311947 AATGTTGTAGTCGGCTAAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGACG 312006 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 |||||||| ||||| || |||||||| || || || || ||| ||||| || || Sbjct 312007 TTGTTGGTCTGGTGGGATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGT 312066 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || ||||| |||||||| || ||||||||||| |||| ||||| | ||| ||||| Sbjct 312067 ATCCGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTG 312126 Query 172067 CATTTT 172072 |||||| Sbjct 312127 CATTTT 312132 >seq2360 Length=898569 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | || ||||| | || | || || || || ||||| Sbjct 281216 ATACCACCTCTGAGGCGGAGGACCAAATGCAGGGTTGATTCCTTTTGGATGTTGTAATCA 281157 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| | | || |||| || || |||||||| || | ||||| ||||||||| Sbjct 281156 GCCAAAGTCCTGCCATCCTCCAGCTGCTTCCCAGCAAAGATAATCCTCTGCTGGTCAGGT 281097 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| || || | || ||||| || ||||| || ||| Sbjct 281096 GGAATGCCCTCCTTATCTTGAATCTTCGTCTTCACATTGTCAATTGTATCCGAGCTTTCA 281037 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||| || || ||||| ||||| | || |||| || || ||||| Sbjct 281036 ACTTCTAGGGTGATAGTTTTCCCAGTAAGCGTCTTAACAAAGATTTGCAT 280987 >seq1558 Length=1070493 Score = 100 bits (110), Expect = 5e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| || | ||||| || || || || | | ||| ||||| || || || ||||| | Sbjct 239308 CGTCTTCAAGCTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCT 239249 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| || ||| | || ||||| || || ||||| ||||| || ||||| || | Sbjct 239248 TGTCTTGGATCTTAGTCTTCACATTGTCGATGGTGTCTGAGGATTCAACCTCTAGGGTTA 239189 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||||| ||||||| ||||| | |||||||||||| || Sbjct 239188 TTGTTTTCCCAGTTAGGGTTTTCACGAATATCTGCATCTT 239149 >seq2659 Length=772501 Score = 87.8 bits (96), Expect = 3e-12 Identities = 162/237 (68%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 39125 ACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 39184 ||| ||||| || ||| | |||||||| | ||||| | || || || ||||| Sbjct 20959 ACAAGCAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAA 20900 Query 39185 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 39244 || |||||||| || | |||||||||||| || || || |||||| | || ||||| Sbjct 20899 ACCCGGCATTAACCCACGCTTTTTAAGCCAGAAGATGGAGCAAAAACTCCCGGAGAAGAA 20840 Query 39245 TATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAA 39304 || || || ||||| ||||| || |||| || | |||| | ||| || | Sbjct 20839 AATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAA---TGATTCTGCACCATC 20783 Query 39305 AATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGC 39361 ||||||| | |||||||| || || || || | | |||| ||| |||| || || Sbjct 20782 AATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGC 20726 >seq2770 Length=737149 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| || || | || | ||| | || || | ||| || || || || |||||||| Sbjct 635911 AATATTGTAGTCAGCCAAGGTGCGTCCATCCTCAAGTTGCTTCCCGGCGAAGATTAATCT 635970 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| ||||| || | || || ||||| || || |||||| |||| |||||| | ||| Sbjct 635971 CTGCTGGTCCGGGGAAATCCCCTCTTTGTCCTGGATTTTAGTTTTCACATTATCGACAGT 636030 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAA 172056 |||||| | || || || || ||||| || ||||| || || |||| Sbjct 636031 ATCTGAGCTCTAAACCTCCAGGGTGATGGTCTTCCCAGTCAAAGTCTTAA 636080 >seq2306 Length=232912 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || ||||||||||| || || ||||| ||||| || || || || || || || || || Sbjct 176412 TGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGAATC 176471 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| ||||||||| || ||||| || || || || ||||| ||||| || ||| Sbjct 176472 TTAGCCTTTACATTATCAATTGTATCCGAGCTCTCAACCTCCAGAGTGATGGTCTTGCCA 176531 Query 172044 GTTAATGTTTTAATGAATATCTGCATT 172070 || || || || | || ||||||||| Sbjct 176532 GTCAAGGTCTTCACAAAAATCTGCATT 176558 >seq2628 Length=130910 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 39117 TATAGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTA 39176 || || | ||| |||||||| |||| ||||||||||| ||||||| || || | Sbjct 123091 TACAGAAGACAGGCAAAATCACAGTGTAGGCCTTCGTCCCTTGATATAAGCTCGTTTGAA 123150 Query 39177 AAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATAT 39220 ||||||| || ||||| | ||||||||||||||||||||||| Sbjct 123151 TAAGTTAAACCAGGCATCATGCCTCTCTTTTTAAGCCAAAATAT 123194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905101910315400