Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2655 143 8e-29 seq403 132 1e-25 seq2602 125 2e-23 seq2804 118 3e-21 seq781 116 1e-20 seq2260 84.2 6e-11 >seq2655 Length=132589 Score = 143 bits (158), Expect = 8e-29 Identities = 220/314 (70%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||||||| || || || |||||||||| || || |||| ||||| | || | Sbjct 5630 CCAACAGCGTCGATCTCATCAATGAAAACCAAGCAAGGAGCATTTTCCTTGGCCTTGTTG 5571 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || || ||||| || | || || |||| || ||| |||| || | |||||||| | Sbjct 5570 AACAAATCTCTGACTCTAGAAGCCCCAACTCCTACAAACATCTCAATGAATTCAGAGCCT 5511 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 || | | ||| | || ||| || ||||||| |||| | || || || ||||| Sbjct 5510 GAGAGGGAGAAGAACGGCACTCCTGCCTCACCTGCTATTGCCTTAGCTAGCAGGGTCTTC 5451 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA 289269 || ||||| |||||||| | || ||||||||||| || | |||||| || | || | Sbjct 5450 CCGGTTCCTGGTGGTCCAACCAACAGAACTCCCTTAGGAATTTTTGCTCCTACTGAAGCA 5391 Query 289270 TATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCA 289329 | ||||| ||| | |||| || || |||||||||| || || | |||||||||||| Sbjct 5390 AACTTCTCTGGGGTTCTTAAGAACTCCACAATTTCCTGAAAGTCCTGCTTTGCCTCATCA 5331 Query 289330 CATCCTGCTACATC 289343 ||| |||||||| Sbjct 5330 ACTCCCGCTACATC 5317 >seq403 Length=521970 Score = 132 bits (146), Expect = 1e-25 Identities = 285/422 (68%), Gaps = 22/422 (5%) Strand=Plus/Plus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| || || | ||||| | || |||||||| ||||||||| ||| Sbjct 212244 AAACCCATCCATCTCAGTCAACAACTGATTGATAGTCTGTTCCCTCTCATCATTTCCACC 212303 Query 288999 TCTTGAATCACCCGAATC--GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGA 289054 || | | || |||||| ||| | |||||||||||||| || ||||| | Sbjct 212304 TC----------CCATTCCTGCTCCTCTTTGCCTCCCAACAGCATCAATCTCATCAATAA 212353 Query 289055 AAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTC 289114 | | | || |||| || |||| | |||| || || || || | ||| |||| Sbjct 212354 ACACAATGCAAGGAGCCTTACTCTTCGCCTTCTCAAACAAATCCCTCACCCTGGAAGCTC 212413 Query 289115 CAAGACCAACATACATTTCTACAAATTCAGAAGC-GGATACTTGAATGAATGTTACATTT 289173 | | ||||||| ||| || ||||| |||||||| | | || || ||| | ||| Sbjct 212414 CCACACCAACAAACAGCTCCACAAACTCAGAAGCTGCACAC-GAAAAGAACGGCACACCG 212472 Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAAT 289233 || || || || || |||||||||| | |||||| || |||||||| || ||| | | Sbjct 212473 GCCTCACCAGCGACCGCCCTCGCCAACAATGTCTTTCCGGTTCCAGGGGGGCCCACAAGG 212532 Query 289234 AGAACTCCCTTTGGTACTTTTGCCCC---AGCAGACTTATATTTCTCAGGGCTCTTTAAA 289290 ||| || ||||| | ||| ||||| |||| | || || |||||| |||| ||| Sbjct 212533 AGACACCCTTTTGGGATTTTAGCCCCCAATGCAG---TGTACTTATCAGGGTTCTTCAAA 212589 Query 289291 AATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAA 289350 || || |||| ||||| | ||| || |||| |||| || || ||||| || || Sbjct 212590 AAGTCCACAACTTCCTGCAATTCTAGCTTAGCCTGATCAGCACCGGCAACATCGGCGAAT 212649 Query 289351 GT 289352 || Sbjct 212650 GT 212651 >seq2602 Length=138255 Score = 125 bits (138), Expect = 2e-23 Identities = 224/319 (70%), Gaps = 10/319 (3%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||| ||||||||| || ||||||||||| | || || | | |||||| || || | Sbjct 135878 CCAATAGCATCAATCTCATCAATGAAAATAATACTAGGTGCACATTGTCTTGC--TTCCT 135821 Query 289090 --AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 |||| | |||||| | ||||| ||||| ||||||| |||| || | ||| || ||| Sbjct 135820 GGAATAGGTTTCTTACCCTGGATGGTCCAACACCAACAAACATCTCCATAAAATCTGAAC 135761 Query 289148 CGGATACTTGAATGAATGT-TACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | |||| | ||| ||| | |||| | ||| || || |||| | || ||||||||| Sbjct 135760 CAGATA-TGGAAAGAAAGGGTACACCAGATTCCCCAGCAGTTGCCTTAGCTAGAAGTGTC 135702 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGA 289265 || ||||| || ||||| || | || ||| | || || || | |||||| |||| | Sbjct 135701 TTTCCTGTCCCTGGTGGGCCAACCAAGAGAGCACCTTTAGGAATTTTTGCACCCA--AAT 135644 Query 289266 CTT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCT 289324 ||| ||| |||| || ||| | || | |||| ||| | ||| | ||||||| Sbjct 135643 CTTCATACTTCTTCGGATTCTGAAGGAAGTGCACAAACTCCATGATTTCTTGCTTTGCCT 135584 Query 289325 CATCACATCCTGCTACATC 289343 ||||||| || || ||||| Sbjct 135583 CATCACAACCAGCAACATC 135565 >seq2804 Length=724201 Score = 118 bits (130), Expect = 3e-21 Identities = 169/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 ||| || || |||||||| | ||| ||||| || ||||| |||||| | |||| | || Sbjct 338302 GGCAATGAGCCCACACTTTTCACATACATGAACCCTGTATGCATCACTTTGGTCAAAAAG 338243 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 || | || |||| | | ||||| || | ||||||||| || |||||||| || || Sbjct 338242 CCTTTCTTTAAGGAAGTGGGCAGCACCATGGGCAATCATACAGTCTCGCTCCATCTCTCC 338183 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 || |||||||||||||| |||| | ||||| |||||||| | |||||| | | Sbjct 338182 AAATCGAAGACCACCATCACGAGATCGTCCCTCAGCAGGCTGCCTGGTGAGAATCTGTAC 338123 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 |||||| | || ||| ||| |||| ||||||||||| || | |||||| Sbjct 338122 AGGACCTCGGCCACGAGAATGAATCTTGTCATCAACCATATGCTTAAGTCTTTGGTAG 338065 >seq781 Length=476855 Score = 116 bits (128), Expect = 1e-20 Identities = 284/424 (67%), Gaps = 20/424 (5%) Strand=Plus/Minus Query 288936 CTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGA 288995 || ||| |||||||| |||| || ||||| | ||| |||||||||||||||||| Sbjct 28745 CTCAAAGCCATCCATCTCAGTTAGAAGCTGATTCAATGTCTGTTCCCTTTCATCATTT-- 28688 Query 288996 ACCTCTTGAATCACCCGAATC--GCTCCttttt--ttACCAACAGCATCAATTTCGTCAA 289051 || || ||||| || | ||| ||| | || || ||||||||||| |||| Sbjct 28687 -CC-------TCCCCCGATTCCAGTACCTCTTTGCCTTCCTACTGCATCAATTTCATCAA 28636 Query 289052 TGAAAATCACACACGGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACACGGGA 289109 || | | || |||| ||||| | | || ||| ||| | || | || || || Sbjct 28635 CAAACACAATGCAAGGAGCATTTTCTTTTGCCTTCTTGAAAAGA--TCGCGCACTCGAGA 28578 Query 289110 TGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTA 289168 |||||| | ||||||| ||||||| ||||| || || | || | | || | || | | Sbjct 28577 TGCTCCCACACCAACAAACATTTCAACAAACTCTGACCCAGA-AATGGAGAAAAAAGGAA 28519 Query 289169 CATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCT 289228 || ||||| || || | ||| | ||||| || ||||| || || || || || || Sbjct 28518 CACCAGCTTCTCCAGCAATAGCCTTAGCCAGTAGAGTCTTTCCCGTCCCTGGCGGGCCAA 28459 Query 289229 CTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTA 289288 | | ||||| ||||| || | || ||| ||| || | | ||||| | || | Sbjct 28458 CAAGCAGAACACCCTTAGGGATGCGGGCTCCAACAGCAGTAAACCTTTCAGGTTTTTTCA 28399 Query 289289 AAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAA 289348 |||||| |||| ||| || || | ||||| |||||| ||| || |||||| ||| Sbjct 28398 GAAATTCCACAACCTCCATAAAATCCTGCTTTGCTTCATCAACTCCAGCAACATCATCAA 28339 Query 289349 AAGT 289352 |||| Sbjct 28338 AAGT 28335 >seq2260 Length=976197 Score = 84.2 bits (92), Expect = 6e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010 || ||||||||||||||| || |||||||||||||||| |||| ||||||||| ||| | Sbjct 368998 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 368939 Query 409011 TAGAACAtttttttAA 409026 || |||||||||| Sbjct 368938 GGGACTATTTTTTTAA 368923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471760781861381