Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07-
18] 3,013 sequences; 337,010,935 total letters
Query= NC_021530.1
Length=171407
Score E
Sequences producing significant alignments: (Bits) Value
seq1325 497 1e-135
seq1658 473 1e-128
seq2002 466 2e-126
>seq1325
Length=385796
Score = 497 bits (550), Expect = 1e-135
Identities = 697/969 (72%), Gaps = 7/969 (1%)
Strand=Plus/Plus
Query 157601 ACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCA 157660
|| || ||| | || ||| | || ||||| || || ||||||| ||||| | ||| |
Sbjct 7006 ACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCAACCTTATTGACT 7065
Query 157661 GCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCAT 157719
||||| ||||| || || | |||||| | |||||||| | || || || || || ||
Sbjct 7066 GCAACT-TCTGTATTTATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGTAT 7124
Query 157720 CCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGT 157779
||||||| || | || || || | || || ||||| || || || ||||| || |
Sbjct 7125 TCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGCCATTAT 7184
Query 157780 ACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGA 157839
|| |||| || || || | ||||| ||||| || |||||||| || || ||||
Sbjct 7185 TCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTTGA 7244
Query 157840 TGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTAT 157899
||||||| | || ||||| ||||||| |||| | || | |||| | ||||| |
Sbjct 7245 TGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGGTGT 7304
Query 157900 CT-ATGCATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGA 157958
||| || ||||| ||||||||||||||| | |||| | ||||||||||| ||||
Sbjct 7305 AGCATGT-TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGA 7363
Query 157959 TCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTT 158018
| ||| |||||||| ||||| || || || || ||| ||| ||| | |||| |
Sbjct 7364 TTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGTTGTTTTCTTGATCTACCTAA 7423
Query 158019 TCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACA 158078
| |||||||| || || |||| ||||||||| || |||||| ||||||| |||| |
Sbjct 7424 TTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTA 7483
Query 158079 TGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTG 158138
|| |||||||||| || || ||||||||||||||||| || || | ||| | ||||| |
Sbjct 7484 TGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAG 7543
Query 158139 CTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCAC 158198
|||| || |||| || ||||||| ||||||||| || | || |||| ||
Sbjct 7544 CTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCATGGTTCCTTGGTAACTT-CTAGT 7602
Query 158199 TCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACGGTTACAAGTTCGGTCAAGAG 158257
| | || | ||||| || ||| || || || | ||||||| ||| | ||||||
Sbjct 7603 TTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAGAG 7662
Query 158258 GAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATAC 158317
||||| || ||||| || || || || ||||| || ||||| || |||||||| |||||
Sbjct 7663 GAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCAATAT 7722
Query 158318 GCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGC 158377
||| ||||||||||| ||||| || | ||||||| | ||||| |||||||| || ||
Sbjct 7723 GCTAGTTTCAACAACTCTCGTTCTTTAC-CTTCTTCTTAGCTGCTTGGCCTGTAGTAGGT 7781
Query 158378 ATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTC 158437
|| ||||| || || | || | || ||||| |||||| | || |||||||| |||
Sbjct 7782 ATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATTTC 7841
Query 158438 AACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAAC 158497
||||| || | ||||| |||| |||||||| | | || ||||| ||| | | |||
Sbjct 7842 AACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACTTGGGCTGATATCATTAAC 7901
Query 158498 CGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGAC 158557
| ||| |||||||||||||||||||||| ||||| || || |||||||| | |||
Sbjct 7902 CATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCAAGAC 7961
Query 158558 CTTGCTGCT 158566
|| || |||
Sbjct 7962 CTAGCCGCT 7970
>seq1658
Length=355568
Score = 473 bits (524), Expect = 1e-128
Identities = 705/992 (71%), Gaps = 20/992 (2%)
Strand=Plus/Minus
Query 157589 TGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCA 157648
||| ||||| || | ||||| || ||| | || ||||| || || ||||||| ||
Sbjct 187915 TGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCT 187856
Query 157649 ACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGA 157707
|| | ||| | ||||| ||||| || || | |||||| | |||||||| | | ||
Sbjct 187855 ACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGA 187797
Query 157708 CATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTC 157767
|| || || || |||||||| || | || || || | || || || || || || ||
Sbjct 187796 TATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTC 187737
Query 157768 TGGTGCAGTTGTACCATCTTCCAACGCAATTG---GTCTTCACTTCTATCCCATCTGGGA 157824
||| | || | || ||| ||| ||| | | ||||| ||||| || || ||
Sbjct 187736 GGGTACCATTATTCCTACTTTT---GCAGTTGTAGGGTTGCACTTTTATCCAATATGAGA 187680
Query 157825 AGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCA 157884
||| || | ||||||||||| | || ||||||||||||| |||| | || | ||
Sbjct 187679 AGCGGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACA 187620
Query 157885 CTTCCTCATTGGTATCT-ATGCATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAG 157943
||| | ||||| | ||| || ||||| ||||||||||||||| | |||| |||
Sbjct 187619 CTTTTTACTTGGTGTAGCATGT-TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAG 187561
Query 157944 GTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTAT 158003
|||||||||| ||||| ||| ||||||| |||| | || || || ||||||| |
Sbjct 187560 GTATGCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTT 187501
Query 158004 TCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTG 158063
|| | |||| || | |||||||| || | |||| ||||||||| | |||||||
Sbjct 187500 TCTTGATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTG 187441
Query 158064 GTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCC 158123
||||||| |||| ||| |||||||| | || || ||||||||||||||||| || || |
Sbjct 187440 GTACTTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTC 187381
Query 158124 ATATGCTCGGTGTTGCTGGGG--------TATTCGGTGGATCTCTTTTCTCTGCTATGCA 158175
| ||| | ||||| ||||| | ||||||| | ||||||| |||||||||
Sbjct 187380 ACATGTTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCTTTCTAGTGCTATGCA 187321
Query 158176 CGGAAGTCTCGTTACTTCCTCACTCG-TTCGTGAAACGACTGAAACAGAGTCACAGAACT 158234
|| || | || || || | | || | ||||| || |||| || || ||
Sbjct 187320 TGGTTC-CTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATG 187262
Query 158235 ACGGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACT 158294
| ||||||| ||||| ||||||||||| || ||||| || || || || ||||| || |
Sbjct 187261 AGGGTTACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATT 187202
Query 158295 TCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCC 158354
||| || |||||||| ||||| || |||||| |||| ||||| || |||||||||
Sbjct 187201 TCGCCCGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCT 187142
Query 158355 TTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCAT 158414
| ||||| |||||||| || || || ||||| | || | || | || ||||| |
Sbjct 187141 TAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCT 187082
Query 158415 TCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGA 158474
||||| | || |||||||| |||||||| || | ||||| |||| |||||||| | |
Sbjct 187081 TCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTA 187022
Query 158475 ACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTA 158534
| || ||||| ||| | | ||||| ||| ||||||||||||||||||||||| ||||
Sbjct 187021 ATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 186962
Query 158535 ACGCACACAACTTCCCACTCGACCTTGCTGCT 158566
| || || |||||||| || ||||| || |||
Sbjct 186961 ATGCTCATAACTTCCCTCTAGACCTAGCCGCT 186930
>seq2002
Length=1023113
Score = 466 bits (516), Expect = 2e-126
Identities = 710/1007 (71%), Gaps = 3/1007 (0%)
Strand=Plus/Plus
Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365
||||||||| | | || || || |||||||| || |||||||| ||| | || |||
Sbjct 167440 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGGCTATTGCT-CTT 167498
Query 159366 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 159425
| ||||||| | ||| | || |||||| |||| || ||| | ||||| || |||
Sbjct 167499 TCGTGTGCTTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 167558
Query 159426 TACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGTC 159485
|| ||||| || | || ||||| ||| | || ||| || || | || || | ||
Sbjct 167559 TATACCCATGGATTGGCCAGTTCTTATTTGGAAGGTTGCAATTTCTTAACCGCGACAGTT 167618
Query 159486 TCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 159545
|| || |||||| | | | | || ||| | | |||| |||||||| || | ||
Sbjct 167619 TCTACTCCTGCTAATAGTTTAGCCCACTCTTTATTGTTACTGTGGGGTCCCGAAGCACAA 167678
Query 159546 GG-GAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGG 159604
|| || ||| | || ||||| ||| | || || | |||| |||||| || || || ||
Sbjct 167679 GGAGACTTTACT-CGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCATGG 167737
Query 159605 TGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATTGGTAT 159664
||| ||||| || || ||||| ||| | ||||| || || || || || | || |
Sbjct 167738 TGCTTTCGCACTTATAGGTTTTATGTTACGTCAATTCGAGCTTGCTCGATCCGTTCAATT 167797
Query 159665 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCT 159724
|| ||||| ||||| || || || |||||||| |||||||||||||| || |||||
Sbjct 167798 GCGCCCTTATAATGCAATCGCATTATCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCT 167857
Query 159725 CATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAAT 159784
|| || ||| | |||||||| ||||||| || || || ||||| | ||||| ||
Sbjct 167858 AATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTATAGCAGCTAT 167917
Query 159785 CTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATAT 159844
||| ||||| | | || ||||||| ||||| || ||||| | ||||| || |||||
Sbjct 167918 ATTTCGATTCATTCTCTTTTTTCAAGGGTTTCATAATTGGACACTGAATCCATTTCATAT 167977
Query 159845 GATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGT 159904
|||||||||||| ||| || | || | || ||||| | || || ||||||| ||| ||
Sbjct 167978 GATGGGAGTTGCCGGTGTATTGGGCGCCGCTCTACTATGCGCTATTCATGGCGCTACCGT 168037
Query 159905 AGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAAC 159964
||| || | | | |||||| || || |||||||| || ||| ||| | ||||
Sbjct 168038 AGAAAATAATTTATTTGAAGACGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAAC 168097
Query 159965 TCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 160024
|||| || || ||||| || |||||||| || |||||||| ||||| || || || ||
Sbjct 168098 CCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTTTGG 168157
Query 160025 TATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGG 160084
|||| ||||| || || | ||| | |||||||| ||||| ||||| || || | ||
Sbjct 168158 CGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGG 168217
Query 160085 TCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTT 160144
| | |||| || |||| | | || | ||| | || || ||||| || || ||
Sbjct 168218 TTTATGGATGAGTGCTCTTGGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATGACTT 168277
Query 160145 CGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAA 160204
| | || || ||| | ||||| |||||||| |||||||| || ||||||||||||||
Sbjct 168278 CATTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAA 168337
Query 160205 CATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAA 160264
|| || || |||||||| | ||||| ||| |||| || ||||| || ||||||||
Sbjct 168338 TATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 168397
Query 160265 CTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311
| |||| ||||| || || || | || | || ||||| |||||||
Sbjct 168398 CCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAAT 168444
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548353746849160
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