Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq1325 457 1e-123 seq1658 403 2e-107 seq2002 329 4e-85 >seq1325 Length=385796 Score = 457 bits (506), Expect = 1e-123 Identities = 668/943 (71%), Gaps = 1/943 (0%) Strand=Plus/Plus Query 72275 TTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTG 72334 |||| ||||||||||| || ||||||||| | | ||||| || || || ||| Sbjct 7025 TTGGATGGTTTGGTGTTTTGATGATCCCAACCTTATTGACTGCAACTTCTGTATTTATTT 7084 Query 72335 TAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTT 72394 |||| ||||| |||||||||| ||| ||||| || || || | |||| ||| | || | Sbjct 7085 TAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGTATTCGTGAACTTGTTTCCGGGT 7144 Query 72395 CTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAG 72454 || | | || || ||||| || || || ||||| | |||| |||| || |||| Sbjct 7145 CTCTACTTTACGGAAACAATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAG 7204 Query 72455 GATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAG 72514 | || ||||| ||||| || ||||||||||| | | || |||||||| || ||||||| Sbjct 7205 GGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTTGATGAGTGGTTATACAACGGAG 7264 Query 72515 GTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGAC 72574 ||||||| | || || || | |||| | |||| | | || |||||| | Sbjct 7265 GTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGGTGTAGCATGTTATATGGGTCGTG 7324 Query 72575 AGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCAC 72634 |||||||||| | | | || || ||| | |||||||| ||| ||||| ||||| | Sbjct 7325 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGATGTTGCATATTCAGCTC 7384 Query 72635 CTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTG 72694 | || | || || || || ||| | | || | | | ||||| || || |||| Sbjct 7385 CGGTTGCAGCGGCTACTGTTGTTTTCTTGATCTACCTAATTGGTCAAGGAAGCTTTTCTG 7444 Query 72695 ATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAAC 72754 |||||||||| ||||| ||||| |||| |||||||| ||| | || ||||| || || | Sbjct 7445 ATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGC 7504 Query 72755 ACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTC 72814 ||||||| || ||||| || || | ||| ||||||||| ||| |||||| || || Sbjct 7505 ACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAGCTGGTGTGTTCGAAGGCTCTC 7564 Query 72815 TCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGA 72874 | | ||||| ||||| ||||| | || ||||| | | ||||| || || ||| | | Sbjct 7565 TTTATAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACATAAA 7624 Query 72875 ACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTG 72934 | || | || | || || | ||| | ||||| |||||||| ||||| ||||| | Sbjct 7625 ATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAGAGGAAGAAACTTATAATATTGTAG 7684 Query 72935 CTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTT 72994 |||||||||| || ||||| |||| ||||| || ||||| |||||||||||||||| Sbjct 7685 CTGCTCATGGTTATTTCGGCCGATTGATCTTTCAATATGCTAGTTTCAACAACTCTCGTT 7744 Query 72995 CATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTA 73054 | |||| ||||||| | |||| | |||||||| || | ||||| || | | |||| Sbjct 7745 CTTTAC-CTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTA 7803 Query 73055 TCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAA 73114 | |||| ||||| |||||| | || || ||||| ||||||||||| || || ||| Sbjct 7804 TTAGTACTATGGCCTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTC 7863 Query 73115 ACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAG 73174 | || | | | || |||| ||| | ||||| || ||| |||| ||||||| Sbjct 7864 AAGGTCGTGTAATTCATACTTGGGCTGATATCATTAACCATGCTAACTTTGGTATGGAAG 7923 Query 73175 TTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 73217 ||||||||||| | ||||| || |||||||| | ||||||||| Sbjct 7924 TTATGCATGAACGTAATGCTCATAACTTCCCTCAAGACCTAGC 7966 >seq1658 Length=355568 Score = 403 bits (446), Expect = 2e-107 Identities = 680/983 (69%), Gaps = 10/983 (1%) Strand=Plus/Minus Query 72244 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 72303 ||| |||| |||||| || || | || |||| ||||||||||| || |||||||| Sbjct 187915 TGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCC- 187857 Query 72304 TGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGA 72362 | ||| | ||||| || || || ||| |||| ||||| |||||||||| | | || Sbjct 187856 TACCTTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGA 187797 Query 72363 TATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTC 72422 ||| || || || | ||||| ||| | || ||| | | || || || || || || || Sbjct 187796 TATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTC 187737 Query 72423 TGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGC 72482 ||| | | |||| ||| | |||| || ||||| ||||| || || ||||| Sbjct 187736 GGGTACCATTATTCCTACTTTTGCAGTTGTAGGGTTGCACTTTTATCCAATATGAGAAGC 187677 Query 72483 AGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTT 72542 || | || |||||||| || ||||| |||||||| | || || || | ||||| Sbjct 187676 GGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTT 187617 Query 72543 CCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAAT 72602 | |||| | | || |||||| | |||||||||| | | | ||||| || Sbjct 187616 TTTACTTGGTGTAGCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTAT 187557 Query 72603 GAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCT 72662 | | |||||||| ||| ||||| | ||| | | | || || ||| || ||| | Sbjct 187556 GCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTTTCTT 187497 Query 72663 TGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTAC 72722 | || ||| | ||||| || ||| | |||||||||||| |||| ||||| ||||| Sbjct 187496 GATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGGTAC 187437 Query 72723 GTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATAT 72782 |||||||| ||| | || ||| | || || |||||||| || ||||| || || || || Sbjct 187436 TTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCACAT 187377 Query 72783 GGCAGGTGTAGCAGGTA--------TGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGT 72834 | ||||||||| ||| | ||||| | ||| | ||||| ||||| ||| Sbjct 187376 GTTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCTTTCTAGTGCTATGCATGGT 187317 Query 72835 TCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGC 72894 || | || | ||| | | || || || || ||||| || || | || | || Sbjct 187316 TCCTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAGGGT 187257 Query 72895 TATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGT 72954 || | ||||| ||||| |||||||| ||||| ||||| ||||||||||| || |||| Sbjct 187256 TACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGCC 187197 Query 72955 AGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCT 73014 |||| ||||| || ||| | |||||| |||||||||| |||||||||||| | ||| Sbjct 187196 CGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTTAGCT 187137 Query 73015 GTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAAC 73074 | | |||||||| || | ||||| | | | ||||| |||| ||||| |||||| Sbjct 187136 GCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTTCAAC 187077 Query 73075 CTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACA 73134 | || || ||||| ||||||||||| || || ||| | || | | || Sbjct 187076 TTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACT 187017 Query 73135 TGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCA 73194 |||| ||| | ||||| | || |||||||| |||||||||||||||||| | ||||| Sbjct 187016 TGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 186957 Query 73195 CACAACTTCCCACTAGACCTAGC 73217 || |||||||| ||||||||||| Sbjct 186956 CATAACTTCCCTCTAGACCTAGC 186934 >seq2002 Length=1023113 Score = 329 bits (364), Expect = 4e-85 Identities = 703/1049 (67%), Gaps = 22/1049 (2%) Strand=Plus/Plus Query 73353 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 73412 ||| ||| | ||||| | | ||||| |||||| ||| || |||||||| || | | Sbjct 167417 AAAAAGATTTATTTGATAGTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAG 167476 Query 73413 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 73472 | |||||||| || || || || | | ||||||| | || | ||||||||||| || Sbjct 167477 GTTGGTCTGGGCTATTGCTCTTTCGT-GTGCTTATTTCGCCTTAGGAGGTTGGTTTACAG 167535 Query 73473 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 73532 | || || || || || |||||||| || ||||| | || || ||| | || || Sbjct 167536 GTACAACCTTTGTAACTTCATGGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGTT 167595 Query 73533 CAAATTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 73592 ||||| ||||| || |||| || || |||| | || | | | || | |||||| Sbjct 167596 GCAATTTCTTAACCGCGACAGTTTCTACTCCTGCTAATAGTTTAGCCCACTCTTTATTGT 167655 Query 73593 TCCTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 73652 | || ||||| || || ||||||||||| || || |||| ||||||||| || || | Sbjct 167656 TACTGTGGGGTCCCGAAGCACAAGGAGACTTTACTCGTTGGTGTCAATTAGGCGGCCTGT 167715 Query 73653 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTG 73712 ||| ||||| || | ||||| | || | ||| |||||||| ||| | | || || | Sbjct 167716 GGACTTTTGTTGCTCTTCATGGTGCTTTCGCACTTATAGGTTTTATGTTACGTCAATTCG 167775 Query 73713 AGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCG 73772 || |||| || ||| | || ||||| || ||| | || || || | || | Sbjct 167776 AGCTTGCTCGATCCGTTCAATTGCGCCCTTATAATGCAATCGCATTATCTGGTCCAATTG 167835 Query 73773 CAGTATTCACGAGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCAC 73832 | || || | || ||||| ||||| |||| ||| | |||||||||| |||| Sbjct 167836 CTGTTTTTGTTTCTGTATTCCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCAC 167895 Query 73833 CTTCATTCGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATA 73892 || || ||| | ||||| || ||||| | ||| | || | || || || || ||| Sbjct 167896 CTAGTTTTGGTATAGCAGCTATATTTCGATTCATTCTCTTTTTTCAAGGGTTTCATAATT 167955 Query 73893 TAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTAT 73952 || || |||||||||||||||||||| || || ||| || | || | || |||||| Sbjct 167956 GGACACTGAATCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCCGCTCTACTAT 168015 Query 73953 GTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTG 74012 | || || ||||| || || ||| | || | || | ||||| || || Sbjct 168016 GCGCTATTCATGGCGCTACCGTAGAAAATAATTTATTTGAAG------------ACGGTG 168063 Query 74013 AAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTT 74072 | || ||| |||| ||| | || || | || || || | ||||| |||| Sbjct 168064 ATGG-----GGCAA-ATACA---TTCCGGGCTTTTAACCCAACCCAAGCCGAAGAAACTT 168114 Query 74073 ATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACA 74132 || ||| | || |||||| | || ||||| || || ||||| | || ||||| || | Sbjct 168115 ATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTTTGGCGTTGCTTTTTCCAATA 168174 Query 74133 AAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTA 74192 || | | ||||| ||| ||||||| || ||||| || | ||| | |||| || Sbjct 168175 AATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTC 168234 Query 74193 TAGGTATCGTAGGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAA 74252 | || | || ||| | || | ||||| | || || ||||| | || || || || Sbjct 168235 TTGGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATGACTTCATTTCCCAGGAAATCC 168294 Query 74253 GAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAG 74312 | ||||| ||||| || || |||||||| |||||||| || || ||||| | || |||| Sbjct 168295 GTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGAAG 168354 Query 74313 GTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAG 74372 |||| | || |||||| | || ||||| || ||||| ||| || | ||||| || | Sbjct 168355 GTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 168414 Query 74373 AAGTCTTGCCACGAGGCAACGCACTATAA 74401 | || | || || || ||||| || ||| Sbjct 168415 AGGTTCTACCCCGTGGAAACGCTCTTTAA 168443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572852024148040