Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2448 165 7e-36 seq758 134 1e-26 seq1925 129 5e-25 seq958 129 5e-25 seq2360 120 3e-22 seq2306 116 3e-21 seq1558 111 1e-19 >seq2448 Length=870776 Score = 165 bits (182), Expect = 7e-36 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| ||||| |||||||| || || | || || ||| | || Sbjct 350295 ATGCAGATTTTCGTGAAAACCCTAACTGGTAAAACCATAACCTTAGATGTCGAATCATCC 350354 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || ||| |||||||||||||||||||| || || || |||||| Sbjct 350355 GACACAATCGACAATGTCAAAATCAAGATCCAAGACAAAGAAGGCATCCCACCAGATCAA 350414 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAA-ACATGTCAGATTATAA 24882 ||||| || |||||||| |||||||| |||| ||| |||| || || ||||||| || Sbjct 350415 CAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTG-CAGATTACAA 350473 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| |||||||| || || || |||||| | ||| | || || || Sbjct 350474 CATTCAGAAGGAATCCACGCTTCATTTGGTGCTTCGACTTCGTGGGGG 350521 >seq758 Length=475707 Score = 134 bits (148), Expect = 1e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| ||||| |||||||| || || || || |||||| || | Sbjct 367803 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTAGAATCCTCG 367744 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || ||| |||||||||||||||||||||||| || || || ||| Sbjct 367743 GACACAATCGACAATGTCAAAGCAAAGATCCAAGACAAAGAAGGAATCCCACCAGACCAA 367684 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| | || || ||||| || ||||| || || | | | | || || ||| Sbjct 367683 CAACGCCTCATTTTCGCCGGAAAGCAGCTCGAAGACGGCCGCACTTTAGCCGACTACAAC 367624 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || || ||||||||||| || ||| Sbjct 367623 ATCCAGAAGGAATCGACTCTTCAC 367600 >seq1925 Length=318408 Score = 129 bits (142), Expect = 5e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||| || || || || || ||||| || || || || ||| | | Sbjct 245157 ATGCAGATCTTTGTTAAGACCCTCACTGGGAAGACTATCACCCTTGAGGTTGAAAGCTCT 245216 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| | || || | |||||| ||| ||||||||||| ||||| || || || ||||| Sbjct 245217 GATACAATTGACAATGTTAAAACCAAA-ATCCAAGACAAGGAAGGTATTCCCCCAGATCA 245275 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||||||| |||||||| |||||| | | | | ||||| || Sbjct 245276 GCAGAGGTTGATCTTTGCCGGAAAACAGCTTGAGGATGGCCGCACTCTTGCTGATTACAA 245335 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || || || ||||| || ||| |||| Sbjct 245336 CATCCAGAAAGAGTCGACCCTCCACCTGGT 245365 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || | || || |||||||| || | || || || | | Sbjct 245613 ATGCAAATTTTCGTCAAGACTTTGACTGGGAAAACTATCACTTTGGAGGTTGAGAGCTCA 245672 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || || || || || || || || ||||| Sbjct 245673 GACACCATCGACAATGTCAAGGCTAAGATTCAGGATAAGGAGGGCATTCCCCCAGATCAG 245732 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||||||||| ||||| ||||| |||||| ||| | | | |||| || ||| Sbjct 245733 CAAAGATTGATCTTTGCAGGGAAGCAGCTCGAGGATGGGAGGACCCTTGCAGACTACAAC 245792 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || ||||| ||||||||| | || || | ||||| Sbjct 245793 ATTCAAAAGGAGTCTACACTTCACTTGGTGCTTCGTTTAAGAGGAGG 245839 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| ||||| |||| || || ||||| ||||| || || ||||| || || | Sbjct 244700 GATGCAAATCTTCGTTAAGACTCTTACCGGAAAAACCATAACTCTCGAGGTTGAGAGTTC 244759 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 ||||| | || || | ||| || || ||| ||||| || || ||||| || || || | Sbjct 244760 TGACACCATCGACAATGTTAAGACGAA-GATTCAAGATAAGGAGGGAATTCCCCCAGACC 244818 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || ||| |||||||||| || || |||||||||||| ||| | | || || | Sbjct 244819 AGCAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAGGATGGCCGAACGCTCGCTGACTACA 244878 Query 24882 ACATTCAAAAGGAATCGACACTACAC 24907 | || || ||||| ||||| || ||| Sbjct 244879 ATATCCAGAAGGAGTCGACCCTCCAC 244904 Score = 86.0 bits (94), Expect = 6e-12 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| |||| || || || || || ||||| || || || || || | Sbjct 244928 GATGCAGATTTTTGTTAAGACCCTCACTGGGAAGACTATCACCCTTGAGGTCGAGAATTC 244987 Query 24763 CGACACAGTAGAAACGGT-AAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 ||||| | || | || ||||| ||| || |||||||| ||||| || || || || | Sbjct 244988 TGACACCATTGACAATGTCAAAACCAAA-ATTCAAGACAAGGAAGGTATTCCCCCAGACC 245046 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || | ||||||||||| || || || || || ||| | | | | ||||| | Sbjct 245047 AGCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACTCTTGCTGATTACA 245106 Query 24882 ACATTCAAAAGGAATCGACACTACAC 24907 |||| || ||||| ||||| || ||| Sbjct 245107 ACATCCAGAAGGAGTCGACCCTCCAC 245132 >seq958 Length=433838 Score = 129 bits (142), Expect = 5e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| ||||| |||||||| || || || ||||| ||| || | Sbjct 312129 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATCCTCG 312070 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||||||| ||||||||||| || || || || ||| Sbjct 312069 GATACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCACCAGACCAA 312010 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||| ||||| |||||||| || ||| | | | | || || ||| Sbjct 312009 CAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACTTTAGCCGACTACAAC 311950 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 ||||| |||||||| || || ||| Sbjct 311949 ATTCAGAAGGAATCCACTCTTCAC 311926 >seq2360 Length=898569 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| |||| ||||| || || |||||||| || || ||||| ||| | | Sbjct 280987 ATGCAAATCTTTGTTAAGACGCTTACTGGGAAAACTATCACCCTAGAAGTTGAAAGCTCG 281046 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || || ||||| ||||| || || || || || || || || Sbjct 281047 GATACAATTGACAATGTGAAGACGAAGATTCAAGATAAGGAGGGCATTCCACCTGACCAG 281106 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| ||||| |||||||||||| || | || | ||||| ||| Sbjct 281107 CAGAGGATTATCTTTGCTGGGAAGCAGCTGGAGGATGGCAGGACTTTGGCTGATTACAAC 281166 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||||||||| || || || ||||| Sbjct 281167 ATCCAAAAGGAATCAACCCTGCATTTGGT 281195 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || ||||| | ||||| ||| | || Sbjct 280531 ATGCAGATCTTTGTCAAGACTCTGACAGGCAAGACGATTACCTTGGAAGTTGAAACTTCC 280590 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||| || || ||||| || || || || || || Sbjct 280591 GACACCATTGAGAATGTGAAGACAAAGATACAGGATAAAGAGGGGATCCCACCAGACCAG 280650 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT-TCGAGAAACATGTCAGATTATAA 24882 || | | || || || ||||| ||||| |||||| | || | || |||| ||||| Sbjct 280651 CAGAGGCTTATTTTCGCAGGGAAGCAGCTTGAGGATGGCCGGACTCTTG-CAGACTATAA 280709 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| ||||| || || || || ||||| | || ||| | ||||| Sbjct 280710 CATTCAGAAGGAGTCTACTCTGCATTTGGTTCTCCGTTTGAGGGGAGG 280757 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || ||||| || ||||| || || | | Sbjct 281215 ATGCAGATCTTCGTGAAGACCCTCACTGGGAAGACTATCACCCTCGAGGTTGAGACTTCT 281274 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | || || ||||| || ||||| || || || || || || ||| Sbjct 281275 GATACAATTGAGAATGTGAAGACCAAGATTCAGGACAAGGAGGGTATCCCCCCAGACCAA 281334 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | |||||||| ||||| || |||||||| ||| | || | ||||| ||| Sbjct 281335 CAGAGGCTCATCTTTGCAGGGAAGCAATTGGAGGATGGTCGAACCTTGGCTGATTACAAC 281394 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 ||||| |||||||| || || || |||| Sbjct 281395 ATTCAGAAGGAATCTACCCTCCATCTTG 281422 >seq2306 Length=232912 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| ||||| || || || || || |||||||| ||| | || Sbjct 177469 ATGCAGATCTTTGTCAAAACCCTAACAGGAAAGACAATCACCCTCGAAGTGGAAAGCTCC 177410 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || | ||| || |||||||| || ||||| || || || || Sbjct 177409 GACACCATTGACAACGTCAAGGCCAAA-ATTCAAGACAAGGAGGGAATTCCCCCAGACCA 177351 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | ||||||| ||||| || ||||| |||||| ||| | | | || || || Sbjct 177350 GCAAAGGCTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGAACCCTCGCTGACTACAA 177291 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||| || ||||| || || || ||| | ||| Sbjct 177290 CATCCAGAAGGAGTCAACTCTCCACCTTGTG 177260 Score = 114 bits (126), Expect = 1e-20 Identities = 160/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 24693 TGATTGATAC-GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAA 24751 ||||| |||| |||||| |||||| | || || || || || || || || || ||||| Sbjct 177708 TGATT-ATACAGATGCAAATCTTTGTGAAGACCCTTACTGGAAAGACCATCACTCTCGAG 177650 Query 24752 GTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATA 24811 || || | ||||| | || | || || |||||||||||||| |||||||| Sbjct 177649 GTTGAGAGTTCTGACACCATTGACAATGTCAAGACTAAGATCCAAGACAAGGAAGGAATT 177590 Query 24812 CCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATG 24871 || || || || ||| | ||||||| ||||| |||||||||||||| ||| | | Sbjct 177589 CCCCCAGACCAGCAAAGGCTGATCTTCGCCGGAAAACAGCTGGAGGACGGCCGAACCCTA 177530 Query 24872 TCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTG 24913 | || || |||||||||||||| || || || ||| | ||| Sbjct 177529 GCTGACTACAACATTCAAAAGGAGTCAACTCTCCACCTTGTG 177488 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || | || || || || || || || || || || | | Sbjct 176557 ATGCAGATTTTTGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAGAGCTCG 176498 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | ||||| ||||| || ||||| || || || || || || || Sbjct 176497 GATACAATTGATAATGTAAAGGCTAAGATTCAGGACAAGGAGGGGATCCCCCCAGACCAG 176438 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || || ||||| |||||| | | | | | | ||||| ||| Sbjct 176437 CAGAGGTTGATCTTTGCTGGTAAGCAGCTCGAGGATGGGCGTACCCTTGCTGATTACAAC 176378 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 ||||| ||||| || || || ||| Sbjct 176377 ATTCAGAAGGAGTCTACCCTTCAC 176354 >seq1558 Length=1070493 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | ||||| ||||| || ||||| || || || || || ||| || | Sbjct 239151 GATGCAGATATTCGTGAAAACCCTAACTGGGAAAACAATAACCCTAGAGGTTGAATCCTC 239210 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||||||||| ||||| || ||||| || || Sbjct 239211 AGACACCATCGACAATGTGAAGACTAAGATCCAAGACAAGGAAGGCATCCCTCCAGACCA 239270 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | ||||| ||||| |||||||| || || | | | | || || || Sbjct 239271 GCAGCGTCTCATCTTCGCCGGAAAACAGCTTGAAGACGGCCGCACTCTCGCCGACTACAA 239330 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||| || ||||| ||||| || ||| ||||| Sbjct 239331 CATCCAGAAGGAGTCGACCCTTCACCTGGTG 239361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449880655731640