Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq2448 104 2e-17 seq2306 91.5 1e-13 seq958 89.7 4e-13 seq1925 87.8 1e-12 seq2360 82.4 6e-11 >seq2448 Length=870776 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || || || ||||| |||| || |||||||| ||| | || || | Sbjct 350292 AATATGCAGATTTTCGTGAAAACCCTAACTGGTAAAACCATAACCTTAGATGTCGAATCA 350351 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || ||| ||||| |||||||||||| | || ||| Sbjct 350352 TCCGACACAATCGACAATGTCAAAATCAAGATCCAAGACAAAGAAGGCATCCCACCAGAT 350411 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| | | || | ||| || ||||| |||| |||| |||||| | || |||||| Sbjct 350412 CAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTAC 350471 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| || ||||| ||| | || ||||| | |||| || ||||| Sbjct 350472 AACATTCAGAAGGAATCCACGCTTCATTTGGTGCTTCGACTTCGTGGGGG 350521 >seq2306 Length=232912 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || ||||| || || ||||| || ||||||||| | || ||| | Sbjct 176786 AATGCAGATTTTCGTCAAGACCTTGACCGGAAAGACCATTACCCTGGAGGTTGAGAGTTC 176727 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || ||| | | || || ||| ||| ||||| |||||| | ||| || || Sbjct 176726 GGACACCATCGACAATGTCAAGGCGAAAATTCAGGACAAGGAAGGCATCCCCCCAGACCA 176667 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || | |||| ||| || || |||||||| |||| || || | ||||||||||| Sbjct 176666 GCAGAGGTTGATTTTTGCCGGCAAGCAGCTGGAAGATGGAAGGACTCTTGCGGATTACAA 176607 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || ||||| || || || | ||| ||||| | || || | || |||| Sbjct 176606 TATCCAAAAGGAGTCAACCCTTCACTTGGTGCTCCGATTGAGGGGAGGAA 176557 >seq958 Length=433838 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCC 110328 |||||||| || || || ||||| |||| || |||||||| ||| | ||| || | || Sbjct 312132 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATCC 312073 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 | ||||| ||| | | || ||| ||||| |||||||||||| | || || Sbjct 312072 TCG-GATACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCACCAGA 312014 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 |||||| | || || | || || |||||||| || |||| | | || | || || || Sbjct 312013 CCAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACTTTAGCCGACTA 311954 Query 110449 CAACATTCAAAAAGAATCTAC 110469 ||||||||| || ||||| || Sbjct 311953 CAACATTCAGAAGGAATCCAC 311933 >seq1925 Length=318408 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTG 110330 ||||||||| || ||||| ||||| || || ||||| || || | || ||| || Sbjct 245612 AATGCAAATTTTCGTCAAGACTTTGACTGGGAAAACTATCACTTTGGAGGTTGAGAGCTC 245671 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || ||| | | || || |||||| || || || ||| | ||| |||| Sbjct 245672 A-GACACCATCGACAATGTCAAGGCTAAGATTCAGGATAAGGAGGGCATTCCCCCAGATC 245730 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | |||||| | || | ||| || || ||||| ||||||| || || | || || |||| Sbjct 245731 AGCAAAGATTGATCTTTGCAGGGAAGCAGCTCGAGGATGGGAGGACCCTTGCAGACTACA 245790 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||||||||| || ||||| | ||| ||||| Sbjct 245791 ACATTCAAAAGGAGTCTACACTTCACTTGGTG 245822 >seq2360 Length=898569 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GCCTG 110330 |||||||| ||||| || || | || || ||||| || ||| | ||| || || | Sbjct 280987 ATGCAAATCTTTGTTAAGACGCTTACTGGGAAAACTATCACCCTAGAAGTTGAAAGCTCG 281046 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 ||||| | | | | || || ||||||| || || || ||| | || || | Sbjct 281047 --GATACAATTGACAATGTGAAGACGAAGATTCAAGATAAGGAGGGCATTCCACCTGACC 281104 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || || |||| | ||| || || ||||||||||||| ||| || |||| ||||||| Sbjct 281105 AGCAGAGGATTATCTTTGCTGGGAAGCAGCTGGAGGATGGCAGGACTTTGGCTGATTACA 281164 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||| ||||| ||||| || |||| |||| Sbjct 281165 ACATCCAAAAGGAATCAACCCTGCATTTGGT 281195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412826440069409