Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2659 95.1 2e-13 >seq2659 Length=772501 Score = 95.1 bits (104), Expect = 2e-13 Identities = 158/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 793907 ATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 793966 |||||| || || | | ||| || || || ||||| || | || |||||||||||||| Sbjct 21244 ATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAACTCCAT 21185 Query 793967 CCACGGGAACGGGTTG-GCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGC 794025 ||| ||| ||||| | || | || ||| ||| ||||||||| || | ||| | Sbjct 21184 CCAATCGAATGGGTTCTGAACTCCG-TAAACCTTTTCGTACCCGAGCGCAGCCAACAGTC 21126 Query 794026 GGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCA 794085 ||| || || || ||||||||||| | ||| || | |||||| || | ||| || Sbjct 21125 TGTCTGCAACAAACTCAATGTACTGACTCATCAGCTCACAGTTCATCCCAACCAGCTTCA 21066 Query 794086 CGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 | || |||| || | || |||||| |||||| ||||| || || Sbjct 21065 CCGGAAGCGCATCAGTTACGAACTCTCGCTCGATATCGACTGCATC 21020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915925893447707