Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1925 107 2e-18 seq2360 93.3 3e-14 seq2306 91.5 1e-13 seq2770 82.4 6e-11 >seq1925 Length=318408 Score = 107 bits (118), Expect = 2e-18 Identities = 182/260 (70%), Gaps = 8/260 (3%) Strand=Plus/Plus Query 107543 TAAGAGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGA 107602 |||||||| || |||||||||| ||||| ||||| || || ||||| || || | || Sbjct 245602 TAAGAGGTGGAA--TGCAAATTTTCGTCAAGACTTTGACTGGGAAAACTATCACTTTGGA 245659 Query 107603 AACGGAG-GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCG 107661 ||| ||| || || ||| | | || || |||||| ||||| || ||| Sbjct 245660 GGTTGAGAGCTCA-GACACCATCGACAATGTCAAGGCTAAGATTCAGGATAAGGAGGGCA 245718 Query 107662 TGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAA 107721 | ||| |||||||| ||| | || | ||| || || ||||| ||||| | | || Sbjct 245719 TTCCCCCAGATCAGCAAAGATTGATCTTTGCAGGGAAGCAGCTCGAGGATGGGAGGACCC 245778 Query 107722 TGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 | || |||||||||||||||||||||||||| | ||| ||||| | | || |||| | Sbjct 245779 TTGCAGACTACAACATTCAAAAGGAGTCTACACTTCACTTGGTGCTTCGTTTAAGAGGAG 245838 Query 107782 GAAATAATAAAAATATTTGT 107801 | ||| |||||||||| Sbjct 245839 G----AATGCAAATATTTGT 245854 >seq2360 Length=898569 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| ||| | |||||||| || |||||| | ||| || || | Sbjct 280531 ATGCAGATCTTTGTCAAGACTCTGACAGGCAAGACGATTACCTTGGAAGTTGAAACTTCC 280590 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || |||||| |||||||| || | || || ||| Sbjct 280591 GACACCATTGAGAATGTGAAGACAAAGATACAGGATAAAGAGGGGATCCCACCAGACCAG 280650 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||||| || || || ||||| ||||| | | || | || ||||| ||| Sbjct 280651 CAGAGGCTTATTTTCGCAGGGAAGCAGCTTGAGGATGGCCGGACTCTTGCAGACTATAAC 280710 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| ||||||||||| |||| |||| Sbjct 280711 ATTCAGAAGGAGTCTACTCTGCATTTGGT 280739 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| ||||| | || ||||| ||||| ||| |||| ||| | Sbjct 280303 ATGCAAATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGACATCT 280362 Query 107616 GATACTGTCGGCCAGGTAAA-ACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | || || || ||| ||| ||||| || || | || ||| || Sbjct 280363 GACACTATTGAGAATGTCAAGACCAAA-ATTCAAGATAAGGAGGGTATACCACCGGACCA 280421 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || ||||| ||| |||| || | || ||| | || |||||||| Sbjct 280422 GCAGAGGCTCATCTTCGCTGGTAAGCAGTTGGATGATGGCAGAACTCTAGCCGACTACAA 280481 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| ||||||||||| || Sbjct 280482 CATCCAAAAGGAGTCCAC 280499 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| || || | || || ||||| || ||| | ||| || ||| | Sbjct 280987 ATGCAAATCTTTGTTAAGACGCTTACTGGGAAAACTATCACCCTAGAAGTTGAAAGCTCG 281046 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || || |||||| ||||| || ||| | || || || Sbjct 281047 -GATACAATTGACAATGTGAAGACGAAGATTCAAGATAAGGAGGGCATTCCACCTGACCA 281105 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| |||| | ||| || || ||||||||||| | || || |||| || ||||| Sbjct 281106 GCAGAGGATTATCTTTGCTGGGAAGCAGCTGGAGGATGGCAGGACTTTGGCTGATTACAA 281165 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| |||||||| || || |||| |||| Sbjct 281166 CATCCAAAAGGAATCAACCCTGCATTTGGT 281195 >seq2306 Length=232912 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| ||||| ||||| || || || || || ||||||||| | || ||| | Sbjct 176786 AATGCAGATTTTCGTCAAGACCTTGACCGGAAAGACCATTACCCTGGAGGTTGAGAGTTC 176727 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || || ||| || || |||||| | ||| || || Sbjct 176726 GGACACCATCGACAATGTCAAGGCGAAAATTCAGGACAAGGAAGGCATCCCCCCAGACCA 176667 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | |||| ||| || || |||||||| || | | || | ||||| ||||| Sbjct 176666 GCAGAGGTTGATTTTTGCCGGCAAGCAGCTGGAAGATGGAAGGACTCTTGCGGATTACAA 176607 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || ||||||||||| || | ||| ||||| | ||||| | || |||| Sbjct 176606 TATCCAAAAGGAGTCAACCCTTCACTTGGTGCTCCGATTGAGGGGAGGAA 176557 >seq2770 Length=737149 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 107548 GGTTTAAA--ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAAC 107605 |||||| | |||||||||||||||||||| |||| |||||| |||| || |||| Sbjct 636733 GGTTTAGATGATGCAAATTTTTGTCAAAACCCTAACTGGCAAATCCATGACTCTCGAGGT 636674 Query 107606 GGAGGCTGGCGATACTGTCGGCCA-GGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGC 107664 ||| | ||||| | | | | ||| || ||| ||| |||||||| || | | Sbjct 636673 CGAGAGTTCTGATACAATTGATAATGTTAAGACCAAA-ATTCAAGATAAAGAGGGGATTC 636615 Query 107665 CCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGG 107724 || ||||||||| | || || | || || |||||||| ||| | | | ||| | | Sbjct 636614 CCCCAGATCAGCAGCGTCTGATCTTCGCTGGAAAACAGCTTGAGAATGGCCGAACCCTTG 636555 Query 107725 CGGACTACAACATTCAAAAGGAGTCT 107750 |||| || | ||| || ||||||||| Sbjct 636554 CGGATTATAGCATCCAGAAGGAGTCT 636529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398862152869957