Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq2002 493 1e-134 seq1325 488 6e-133 seq1658 461 8e-125 >seq2002 Length=1023113 Score = 493 bits (546), Expect = 1e-134 Identities = 707/986 (72%), Gaps = 9/986 (1%) Strand=Plus/Plus Query 158803 GGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTACCCACTGCTTATCTTG 158862 |||| |||||||||||||| || |||||||| || | || || | ||||||| | | Sbjct 167456 GGGACCGTTTCGTTTTTGTAGGTTGGTCTGGGCTATTGCT-CTTTCGTGTGCTTATTTCG 167514 Query 158863 CTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACACATGGACTCG 158922 | | || |||||| |||| || || || || | || |||||||| |||||| | | Sbjct 167515 CCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTGG 167574 Query 158923 CTACTTCCTATCTTGAGGGT-GCAAACTTTCTTA-CAGCAGCAGTTTCGACTCCAGCTGA 158980 | | ||| ||| | || ||| |||| ||||||| | || ||||||| ||||| ||| | Sbjct 167575 CCAGTTCTTATTTGGAAGGTTGCAA--TTTCTTAACCGCGACAGTTTCTACTCCTGCTAA 167632 Query 158981 TGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGA-TTTCGTCA 159039 | | | | || ||| | || | || |||||||| || || ||||| || ||| || Sbjct 167633 TAGTTTAGCCCACTCTTTATTGTTACTGTGGGGTCCCGAAGCACAAGGAGACTTTACTC- 167691 Query 159040 GGTGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGTGCCTTTGCCCTAA 159099 | ||| ||| | || || || |||| |||||| || || || ||||| || || || | Sbjct 167692 GTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCATGGTGCTTTCGCACTTA 167751 Query 159100 TTGGTTTCATGCTTCGCCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCCTACAAT 159158 | ||||| ||| | || || || || || || || || || | | || || || ||| Sbjct 167752 TAGGTTTTATGTTACGTCAATTCGAGCTTGCTCGATCCGTTCAAT-TGCGCCCTTATAAT 167810 Query 159159 GCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTT 159218 || || || || |||||||| |||||||||||||| || ||||| || || ||||| Sbjct 167811 GCAATCGCATTATCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTAATTTATCCACTA 167870 Query 159219 GGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCCGCAATATTCAGGTTCCTA 159278 |||||||| ||||||| || || || ||||| | || || ||||| | ||| | Sbjct 167871 GGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTATAGCAGCTATATTTCGATTCATT 167930 Query 159279 CTCTTCCTACAAGGGTTCCACAATTGGACACTAAACCCCTTCCATATGATGGGAGTTGCT 159338 ||||| | |||||||| || ||||||||||| || || || ||||||||||||||||| Sbjct 167931 CTCTTTTTTCAAGGGTTTCATAATTGGACACTGAATCCATTTCATATGATGGGAGTTGCC 167990 Query 159339 GGTATCCTAGGTGGAGCACTTCTATCTGCTATTCATGGGGTCACAGTTGAAAATACATTA 159398 ||| | | || | || || |||| ||||||||||| | || || ||||||| ||| Sbjct 167991 GGTGTATTGGGCGCCGCTCTACTATGCGCTATTCATGGCGCTACCGTAGAAAATAATTTA 168050 Query 159399 TACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAG 159458 | || || || || ||||| || || ||| ||| | |||| |||| || || Sbjct 168051 TTTGAAGACGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAACCCAAGCCGAAGAA 168110 Query 159459 ACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCT 159518 |||||||| |||||||| || |||||||| ||||| || || || ||| |||| ||||| Sbjct 168111 ACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTTTGGCGTTGCTTTTTCC 168170 Query 159519 AACAAGCGGTGGCTTCATTTCTTTATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCC 159578 || || | ||| | |||||||||||||| ||||| || || | ||| |||||| Sbjct 168171 AATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGT 168230 Query 159579 AGTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAG 159638 | |||| | | ||| | ||| | || || ||||| || || ||| | || || Sbjct 168231 GCTCTTGGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATGACTTCATTTCCCAGGAA 168290 Query 159639 ATCAGAGCAGCAGAAGATCCAGAATTTGAAACGTTCTACACCAAGAACATTCTTCTGAAT 159698 ||| | ||||| |||||||| ||||||||||| ||||||||||| || ||||| | || Sbjct 168291 ATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAAC 168350 Query 159699 GAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTCATCTTCCCA 159758 ||||| | ||||||||| |||| || ||||| || ||||||||| | || ||||| Sbjct 168351 GAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCT 168410 Query 159759 GAAGAAGTTCTACCAAGAGGTAACGC 159784 || || |||||||| | || ||||| Sbjct 168411 GAGGAGGTTCTACCCCGTGGAAACGC 168436 >seq1325 Length=385796 Score = 488 bits (540), Expect = 6e-133 Identities = 697/971 (72%), Gaps = 9/971 (1%) Strand=Plus/Plus Query 157071 CACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTTATGATTCCAACATTGCTTGC 157130 ||| || ||| || | ||| |||| ||||| ||||| | ||||| ||||| || | | Sbjct 7005 CACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCAACCTTATTGAC 7064 Query 157131 AGCAACTATCTGC-TTCATTGTTGCATTCGTAGCAGCACCTCCCGTTGATATCGACGGTA 157189 |||||| |||| || ||| | || ||| | || || |||| || ||||| || |||| Sbjct 7065 TGCAACT-TCTGTATTTATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGTA 7123 Query 157190 TTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAACATCATCTCTGGTGCAGTTG 157249 |||| |||| ||| | || ||||| | || || ||||| || || || ||||| || Sbjct 7124 TTCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGCCATTA 7183 Query 157250 TTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCATCTGGGAAGCAGCATCACTTG 157309 ||||| |||| || || || | ||||| || || || ||||||||||| || ||| Sbjct 7184 TTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTTG 7243 Query 157310 ATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGTCTTTCACTTCCTGATCGGCA 157369 |||||||| | |||||||| ||||||| |||| | || | |||| | | || Sbjct 7244 ATGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGGTG 7303 Query 157370 TCT-ATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGTTTAGGTATGCGCCCCTGG 157428 | ||| |||||||| ||||||||||||||| || |||| | ||||||||||| ||| Sbjct 7304 TAGCATGT-TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGG 7362 Query 157429 ATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCT 157488 || |||||| || || || || || || || || | || || ||| | |||| | Sbjct 7363 ATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGTTGTTTTCTTGATCTACCTA 7422 Query 157489 TTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTAT 157548 | |||||||| || || |||| ||||||||| || |||||| ||||||| |||| | Sbjct 7423 ATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTT 7482 Query 157549 ATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTT 157608 ||| | || |||||||| |||||||| || ||||||||||| || | |||| | || || Sbjct 7483 ATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTA 7542 Query 157609 GCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCG 157668 ||||| || |||| || ||| | | ||||||||| || | || |||| || | Sbjct 7543 GCTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCATGGTTCCTTGGTAACTT-CTAG 7601 Query 157669 CTTGTTC-GTGAAACAACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGA 157727 ||| || | ||||| || ||| || || || | ||||||| ||| | ||||| Sbjct 7602 TTTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAGA 7661 Query 157728 AGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTTCGGTCGCCTGATCTTCCAATA 157787 ||||| || || || || || ||||| || ||||| ||||| || ||||||| ||||| Sbjct 7662 GGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCAATA 7721 Query 157788 CGCTTCATTCAACAACAGCAGAAGTCTTCA-CTTCTTCCTCGCCGCATGGCCTGTTGTCG 157846 ||| ||||||||| | |||| | ||||||| | || || |||||||| || | Sbjct 7722 TGCTAGTTTCAACAACTCTCG--TTCTTTACCTTCTTCTTAGCTGCTTGGCCTGTAGTAG 7779 Query 157847 GCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACT 157906 | || ||||| ||||| | || | || || ||||| |||||| | || |||||||| | Sbjct 7780 GTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATT 7839 Query 157907 TCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTCCTGA 157966 ||||||| || | ||||| |||| |||||||| | | || ||||| ||| || | | Sbjct 7840 TCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACTTGGGCTGATATCATTA 7899 Query 157967 ACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTGG 158026 ||| ||| |||||||||||||||||||||| ||||| || || |||||||| | | Sbjct 7900 ACCATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCAAG 7959 Query 158027 ATCTTGCTGCT 158037 | || || ||| Sbjct 7960 ACCTAGCCGCT 7970 >seq1658 Length=355568 Score = 461 bits (510), Expect = 8e-125 Identities = 702/990 (71%), Gaps = 16/990 (2%) Strand=Plus/Minus Query 157060 TGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTTATGATTCCA 157119 ||| ||||| ||| | |||||| | ||| |||| ||||| ||||| | ||||| || Sbjct 187915 TGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCT 187856 Query 157120 ACATTGCTTGCAGCAACTATCTGC-TTCATTGTTGCATTCGTAGCAGCACCTCCCGTTGA 157178 || || | | |||||| |||| || ||| | || ||| | || || |||| | || Sbjct 187855 ACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGA 187797 Query 157179 TATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAACATCATCTC 157238 ||| || |||||||| ||||| ||| | || ||||| | || || || || || || || Sbjct 187796 TATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTC 187737 Query 157239 TGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCATCTGGGAAGC 157298 ||| | || ||||| ||| | | || | ||||| || || || || ||||| Sbjct 187736 GGGTACCATTATTCCTACTTTTGCAGTTGTAGGGTTGCACTTTTATCCAATATGAGAAGC 187677 Query 157299 AGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGTCTTTCACTT 157358 || | ||||||||||| | |||||||||||||||| |||| | || | ||||| Sbjct 187676 GGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTT 187617 Query 157359 CCTGATCGGCATCT-ATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGTTTAGGTA 157417 | | || | ||| |||||||| ||||||||||||||| || |||| |||||| Sbjct 187616 TTTACTTGGTGTAGCATGT-TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTA 187558 Query 157418 TGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGCAGTATTCC 157477 ||||||| ||||| |||||| || | || | | || || || | ||| || ||| Sbjct 187557 TGCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTTTCT 187498 Query 157478 TCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTA 157537 | |||| || | |||||||| || | |||| ||||||||| | |||||||||| Sbjct 187497 TGATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGGTA 187438 Query 157538 CTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCCGTTCCACA 157597 |||| |||| |||| | || ||| |||| |||||||| || ||||||||||| || |||| Sbjct 187437 CTTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCACA 187378 Query 157598 TGCTCGGCGTTGCTGGGG--------TATTCGGTGGATCTTTGTTCTC-TGCTATGCACG 157648 || | || || ||||| | ||||||| | ||| | |||| ||||||||| | Sbjct 187377 TGTTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCT-TTCTAGTGCTATGCATG 187319 Query 157649 GAAGTCTCGTTACTTCCTCGCTTG-TTCGTGAAACAACTGAAACAGAGTCACAGAACTAT 157707 | || | || || || | ||| || | ||||| || |||| || || || | Sbjct 187318 GTTC-CTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAG 187260 Query 157708 GGTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTTC 157767 ||||||| ||||| ||||| ||||| || || || || || ||||| || ||||| ||| Sbjct 187259 GGTTACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTC 187200 Query 157768 GGTCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTC 157827 | || ||||||| ||||| || |||||| || | | | ||||||||| | Sbjct 187199 GCCCGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTTA 187140 Query 157828 GCCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTC 157887 || || |||||||| || || || ||||| | ||| | || | || || ||||| ||| Sbjct 187139 GCTGCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTTC 187080 Query 157888 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 157947 ||| | || |||||||| |||||||| || | ||||| |||| |||||||| | || Sbjct 187079 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 187020 Query 157948 ACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAAC 158007 || ||||| ||| || | ||||| ||| ||||||||||||||||||||||| ||||| Sbjct 187019 ACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 186960 Query 158008 GCACACAACTTCCCACTGGATCTTGCTGCT 158037 || || |||||||| || || || || ||| Sbjct 186959 GCTCATAACTTCCCTCTAGACCTAGCCGCT 186930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545253063633040