Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq2002 468 6e-127 seq1325 464 8e-126 seq1658 435 4e-117 seq2646 93.3 5e-14 seq936 86.0 8e-12 >seq2002 Length=1023113 Score = 468 bits (518), Expect = 6e-127 Identities = 713/1006 (71%), Gaps = 7/1006 (1%) Strand=Plus/Plus Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008 ||||||||||| | |||| || || || ||||| ||||||||||| || | || | Sbjct 167438 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGGCTATTGCT-C 167496 Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179068 || | ||||||| | ||| | || |||||| |||| || ||| | ||||| || | Sbjct 167497 TTTCGTGTGCTTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 167556 Query 179069 GGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTTCTTA-CGGCAGCT 179127 |||| |||||||| | || ||||| ||| | |||||| || ||||||| | || | Sbjct 167557 GGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGTTGCAA-TTTCTTAACCGCGACA 167615 Query 179128 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 179187 || || || |||||| || | | | || ||| | | |||| |||||||| || | Sbjct 167616 GTTTCTACTCCTGCTAATAGTTTAGCCCACTCTTTATTGTTACTGTGGGGTCCCGAAGCA 167675 Query 179188 CAGGG-GAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCA 179246 || || || ||| | || ||||| ||| | || || || |||| ||| || ||||| || Sbjct 167676 CAAGGAGACTTTACT-CGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCA 167734 Query 179247 CGGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCG 179305 ||||| ||||| || || || || ||| | ||||| || || || || || || || Sbjct 167735 TGGTGCTTTCGCACTTATAGGTTTTATGTTACGTCAATTCGAGCTTGCTCGATCCGTTCA 167794 Query 179306 GTATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTAT 179365 | | || ||||| ||||| || || || ||||||| ||||| || || ||| ||||| Sbjct 167795 AT-TGCGCCCTTATAATGCAATCGCATTATCTGGTCCAATTGCTGTTTTTGTTTCTGTAT 167853 Query 179366 TTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGG 179425 | || || || ||||| || || || ||||||||||||| || |||||| | || | Sbjct 167854 TCCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTATAGCAG 167913 Query 179426 CGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTC 179485 | || ||| ||||| | || || || ||||| || || || |||||||| || || |||| Sbjct 167914 CTATATTTCGATTCATTCTCTTTTTTCAAGGGTTTCATAATTGGACACTGAATCCATTTC 167973 Query 179486 ACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAA 179545 | |||||||||||||| ||| | |||| | ||||| || | ||||||||||| | | Sbjct 167974 ATATGATGGGAGTTGCCGGTGTATTGGGCGCCGCTCTACTATGCGCTATTCATGGCGCTA 168033 Query 179546 CTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACT 179605 | ||||| |||| || | |||||| || || ||||| ||||| || || || Sbjct 168034 CCGTAGAAAATAATTTATTTGAAGACGGTGATGGGGCAAATACATTCCGGGCTTTTAACC 168093 Query 179606 CTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCT 179665 | || |||| || || || ||||| ||||| || || ||||| |||||||| || || | Sbjct 168094 CAACCCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTT 168153 Query 179666 TCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCA 179725 | || ||| | ||| |||||| ||||||| || ||||||| | | ||||| || || | Sbjct 168154 TTGGCGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAA 168213 Query 179726 TGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATG 179785 ||| | ||| | | || |||| | | || | ||| | || || ||||| |||| Sbjct 168214 CCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATG 168273 Query 179786 ATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAA 179845 | || | || || ||| | ||||| ||||||||||| || || || ||||| || | Sbjct 168274 ACTTCATTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCA 168333 Query 179846 AGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATG 179905 | || ||||| | || ||||| | ||||||||| |||| || ||||| || |||| Sbjct 168334 AAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATG 168393 Query 179906 AAAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 ||||| | || ||||| || || || ||||| |||| ||||| || Sbjct 168394 AAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 168439 >seq1325 Length=385796 Score = 464 bits (514), Expect = 8e-126 Identities = 683/956 (71%), Gaps = 12/956 (1%) Strand=Plus/Plus Query 177579 ACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCA 177638 || || ||| | || ||| | || ||||| || || ||||||| ||||| | ||| | Sbjct 7006 ACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCAACCTTATTGACT 7065 Query 177639 GCAACTATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCCCCCCGTGGACATCGACGGCAT 177697 |||||| |||| || || | |||||| | |||||||| | || || || || || || Sbjct 7066 GCAACT-TCTGTATTTATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGTAT 7124 Query 177698 CCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGT 177757 ||||||| || | || || || | || || ||||| || || || ||||| || | Sbjct 7125 TCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGCCATTAT 7184 Query 177758 ACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGA 177817 || |||| || || || | ||||| ||||| || |||||||| || || |||| Sbjct 7185 TCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTTGA 7244 Query 177818 TGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCAT 177877 ||||||| | || ||||| ||||||| |||| | || | |||| | | || | Sbjct 7245 TGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGG--T 7302 Query 177878 CTATGCAT---ATATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTG 177934 || |||| ||||||| ||||||||||||||| | |||||| ||||||||||| || Sbjct 7303 GTA-GCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTG 7361 Query 177935 GATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATC 177993 ||| ||||||||| || || || |||||||| || | | || ||||| | |||| | Sbjct 7362 GATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGTTGT-TTTCTTGATCTACC 7420 Query 177994 CTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACT 178053 | |||||||| || || |||| ||||||||| || |||||| ||||||| |||| Sbjct 7421 TAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACT 7480 Query 178054 ACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTG 178113 ||| |||||||||| || || ||||| ||||||||||| || || | |||| | |||| Sbjct 7481 TTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTG 7540 Query 178114 TTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTT 178173 | ||||| || |||| || ||||||| |||||||||||| | || |||||| Sbjct 7541 TAGCTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCATGGTTCCTTGGTAACTTCTA 7600 Query 178174 CGCTCGTCCGTGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAG 178233 | || | || || ||| ||| ||| || || | ||||||| ||| | |||| Sbjct 7601 GTTTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAG 7660 Query 178234 AAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAAT 178293 | |||||||| ||||| || || || || |||||||| ||||| || |||||||| |||| Sbjct 7661 AGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCAAT 7720 Query 178294 ATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTG 178353 |||| ||||||||||| ||||| | | ||||||| | || || ||||||||||| | Sbjct 7721 ATGCTAGTTTCAACAACTCTCGTTCTTTAC-CTTCTTCTTAGCTGCTTGGCCTGTAGTAG 7779 Query 178354 GAATCTGGTTCACCGCACTTGGTGTATCCACCATGGCATTTAACCTCAATGGATTCAACT 178413 | || ||||| || || | ||| | || ||||| || ||| | ||||| ||||| | Sbjct 7780 GTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATT 7839 Query 178414 TCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCA 178473 ||||||| || | | || | ||||| ||||| | | || ||||| || | | | Sbjct 7840 TCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACTTGGGCTGATATCATTA 7899 Query 178474 ACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAAAGAAATAGCACATAACTTCCC 178529 ||| ||| | || |||||||| ||||| ||| | ||| || ||||||||||| Sbjct 7900 ACCATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAAT-GCTCATAACTTCCC 7954 >seq1658 Length=355568 Score = 435 bits (482), Expect = 4e-117 Identities = 699/994 (70%), Gaps = 25/994 (3%) Strand=Plus/Minus Query 177567 TGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCA 177626 ||| ||||| || | ||||| || ||| | || ||||| || || ||||||| || Sbjct 187915 TGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCT 187856 Query 177627 ACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCCCCCCGTGGA 177685 || | ||| | |||||| |||| || || | |||||| | |||||||| | | || Sbjct 187855 ACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGA 187797 Query 177686 CATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTC 177745 || || || || |||||||| || | || || || | || || || || || || || Sbjct 187796 TATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTC 187737 Query 177746 TGGTGCAGTTGTACCATCTTCCAACGCAATTG---GTCTTCACTTCTATCCCATCTGGGA 177802 ||| | || | || ||| ||| ||| | | ||||| ||||| || || || Sbjct 187736 GGGTACCATTATTCCTACTTTT---GCAGTTGTAGGGTTGCACTTTTATCCAATATGAGA 187680 Query 177803 AGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCA 177862 ||| || | ||||||||||| | || ||||||||||||| |||| | || | || Sbjct 187679 AGCGGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACA 187620 Query 177863 CTTCCTTATCGGCATCTATGCAT---ATATGGGACGTGAGTGGGAACTTTCATACCGTCT 177919 ||| | | || | || |||| ||||||| ||||||||||||||| | |||||| Sbjct 187619 CTTTTTACTTGG--TGTA-GCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCT 187563 Query 177920 AGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGT 177979 |||||||||||| ||||| ||||||||| | || | ||||||| || | || || Sbjct 187562 AGGTATGCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGT 187503 Query 177980 CTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTATCT 178038 ||||| | |||| || | |||||||| ||| | |||| ||||||||| | |||| Sbjct 187502 -TTTCTTGATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCT 187444 Query 178039 CTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCACCCGT 178098 |||||||||| |||| ||| |||||||| | || || ||||| ||||||||||| || | Sbjct 187443 CTGGTACTTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCAT 187384 Query 178099 TCCACATGCTCGGTGTTGCTGGGG--------TATTCGGTGGATCTCTTTTCTCTGCTAT 178150 | |||||| | ||||| ||||| | ||||||| | ||||||| |||||| Sbjct 187383 TTCACATGTTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCTTTCTAGTGCTAT 187324 Query 178151 GCATGGAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAACTGAGTCCCAGAA 178210 |||||| | || | |||| | | | || || ||||||| ||| || || Sbjct 187323 GCATGGTTCCTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAA 187264 Query 178211 CTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTA 178270 | ||||||| ||||| ||||| |||||||| ||||| || || || || |||||||| Sbjct 187263 TGAGGGTTACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTA 187204 Query 178271 CTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTT 178330 |||| || |||||||| |||||| | |||||| |||| ||||| | |||||||| Sbjct 187203 TTTCGCCCGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTT 187144 Query 178331 CCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATGGC 178390 | | || || ||||||||||| || || ||||| | || | ||| | || ||||| Sbjct 187143 CTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGC 187084 Query 178391 ATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCT 178450 || ||| | ||||| ||||| |||||||| || | | || | ||||| ||||| | Sbjct 187083 CTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAAT 187024 Query 178451 CAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAAAG 178510 || || ||||| || | | |||||||| || || |||||||| ||||| ||| | Sbjct 187023 TAATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACG 186964 Query 178511 AAATAGCACATAACTTCCCGCTTGATCTTGCAGC 178544 ||| || ||||||||||| || || || || || Sbjct 186963 TAAT-GCTCATAACTTCCCTCTAGACCTAGCCGC 186931 >seq2646 Length=128401 Score = 93.3 bits (102), Expect = 5e-14 Identities = 168/246 (68%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 138517 TTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTT 138576 ||||| ||| |||||| |||||||| ||||| ||||| || ||| |||| | Sbjct 23988 TTTGAGGCTGCGGATGATACTTACATCCTCGATGCAGCTGAAGACAAAGGGGTTGACTTG 24047 Query 138577 CCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACT 138636 || ||||| || | || ||||| || || |||||||||||| | | || ||||| Sbjct 24048 CCTTACTCATGCAGGGCAGGTGCCTGCTCAACCTGTGCTGGTCAGCTTGTAAGTGGAACA 24107 Query 138637 GTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATG 138696 || |||||||| || || ||||||||||| | ||||| | ||| | | | | Sbjct 24108 GTTGATCAGTCCGATGGATCCTTCCTTGATGACAATCAAATGGAGAAAGGTTATTTGCTC 24167 Query 138697 ACTTGCGTAGCATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTA 138756 ||||| || | ||||| ||| || ||| |||| | || | || |||| || || Sbjct 24168 ACTTGTGTTTCTTACCCGCGATCAGACTGTGTAATCCATACCCACAAGGAGGGTGATCTT 24227 Query 138757 TACTGA 138762 |||||| Sbjct 24228 TACTGA 24233 >seq936 Length=443095 Score = 86.0 bits (94), Expect = 8e-12 Identities = 169/246 (69%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 138517 TTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTT 138576 ||||| || | |||||| |||| || | ||||||||||| || | ||| |||||| | Sbjct 203452 TTTGAGTGCCCGGATGATGTGTACGTCTTGGATGCTGCTGAAGAGGTAGGGATTGATTTG 203511 Query 138577 CCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTA-AATTAGTTGAAGGAAC 138635 || ||||| ||| | ||||| | || || | || || |||| ||| | || || Sbjct 203512 CCTTACTCGTGTAGGGCTGGCTCGTGCTCCTCATGCGCCGGTATGCTTAAGT-CTGGTAC 203570 Query 138636 TGTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCAT 138695 | | || |||||||| || || ||| | ||||||||||| || || || |||| | | Sbjct 203571 TCTCGACCAGTCTGATCAATCCTTCTTAGATGATGACCAGATAGCTGCTGGATGGGTTCT 203630 Query 138696 GACTTGCGTAGCATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACT 138755 ||||| | || ||||| ||| || ||||| ||| | || ||||| || || Sbjct 203631 TACTTGTGCTGCTTACCCTGTTAGTGATGTTACCATTGAGACTCACAAGGAGGAGGAGCT 203690 Query 138756 ATACTG 138761 ||||| Sbjct 203691 -TACTG 203695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605644389059080