Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2306 123 2e-23 seq1558 114 1e-20 seq758 107 2e-18 seq1925 100 3e-16 seq958 98.7 1e-15 seq2360 89.7 5e-13 >seq2306 Length=232912 Score = 123 bits (136), Expect = 2e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | |||||||| ||||| || ||||| ||| ||| || ||| | |||||||| Sbjct 176808 AAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGACCA-TCCTCGAG 176866 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| |||| | || ||||||||| || || || ||||||||||| || Sbjct 176867 CTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGAAT 176926 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | |||| ||||||| | ||| || || | || | ||| || || Sbjct 176927 CTTCGTCTTAACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAAAGTAATGGTCTTCCC 176986 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || |||||||||||||| Sbjct 176987 GGTAAGGGTCTTGACGAAAATCTGCAT 177013 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||| || || ||||||||||| | | || || || ||| Sbjct 176580 AAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCCGCAAGAGTCCTTCCATCTTCCAGC 176639 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || |||| | || ||||||||| || ||||||||||||||||| ||| Sbjct 176640 TGCTTGCCGGCAAAAATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTC-CTGAAT 176698 Query 133575 TTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| | ||||| | || | ||||| | ||| || || | ||| | ||| || || Sbjct 176699 TTTCGCCTTGACATTGTCGATGGTGTCCGAACTCTCAACCTCCAGGGTAATGGTCTTTCC 176758 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || |||||||||||||| Sbjct 176759 GGTCAAGGTCTTGACGAAAATCTGCAT 176785 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | |||||||| ||||| || ||||| || | | ||| | || |||||| Sbjct 177036 AAATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGCCCATCTTCGAGC 177095 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || | || ||| ||||| || || || || |||||||| ||| Sbjct 177096 TGCTTTCCGGCGAAGATCAACCTCTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGAATC 177155 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | |||| || |||| | ||| || |||| ||||| ||| || || Sbjct 177156 TTAGACTTGACATTGTCAATAGTATCGGAGCTCTCGACTTCGAGGGTGATGGTCTTCCCA 177215 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || || || || ||||| Sbjct 177216 GTGAGAGTCTTGACAAAGATTTGCAT 177241 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || | | || | | | |||||||||||||| || Sbjct 177273 GTTGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTTCGGCCA-TCCTCGAGCTGCTTTCC 177331 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CT 133581 ||| | || |||| |||||||| || || || || |||||||| ||| ||| | || Sbjct 177332 GGCGAAGATCAGCCTTTGCTGGTCTGGGGGAATTCCCTCCTTGTC-TTGAATTTTGGCCT 177390 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| ||||||| | ||||| |||| ||||| || || || || || | Sbjct 177391 TGACGTTGTCAATGGTGTCGGAGCTTTCCACTTCGAGGGTGATTGTCTTTCCTGTTAGGG 177450 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || || |||||||| Sbjct 177451 TTTTGACAAAGATCTGCAT 177469 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || |||||||| | | || | |||||||||||||| || Sbjct 176360 GGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTCGAGCTGCTTACC 176419 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || ||||||||| || ||||| || |||||||| ||||| ||| Sbjct 176420 AGCAAAGATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGAATCTTAGCCTT 176479 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| || || | | ||| || || | |||| ||| ||||| |||| || Sbjct 176480 TACATTATCAATTGTATCCGAGCTCTCAACCTCCAGAGTGATGGTCTTGCCAGTCAAGGT 176539 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 176540 CTTCACAAAAATCTGCAT 176557 >seq1558 Length=1070493 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| ||| | | ||| ||| || ||||| || || Sbjct 239349 GGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCAAGCTGTTTTCC 239290 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| ||||||||||| |||||||||||||||||||| |||||| ||| Sbjct 239289 GGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTAGTCTT 239230 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| | || || || || | ||| | ||||| || || || || Sbjct 239229 CACATTGTCGATGGTGTCTGAGGATTCAACCTCTAGGGTTATTGTTTTCCCAGTTAGGGT 239170 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||| Sbjct 239169 TTTCACGAATATCTGCAT 239152 >seq758 Length=475707 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || || ||||| || ||||| ||| | | ||| ||| ||||||||||| || Sbjct 367607 GTCGATTCCTTCTGGATGTTGTAGTCGGCTAAAGTGCGGCCGTCTTCGAGCTGCTTTCCG 367666 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| ||||||| || || ||||| || ||||| ||||| ||||| ||||||| ||| Sbjct 367667 GCGAAAATGAGGCGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATCTTTGCTTTG 367726 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||| | || || || || | ||| | |||||| || || || ||| Sbjct 367727 ACATTGTCGATTGTGTCCGAGGATTCTACCTCTAGGGTTATGGTTTTACCCGTTAGGGTT 367786 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 367787 TTCACGAAGATCTGCAT 367803 >seq1925 Length=318408 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||| || ||||| || ||||| || ||| ||| | |||||| | |||||| || Sbjct 246038 GGTGGATTCCTTCTGAATGTTGTAGTCTGCCAAAGTGCGCCCGTCCTCCAACTGCTTACC 245979 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| | || ||||||||| ||||| || ||||||||||| ||||| ||| Sbjct 245978 AGCAAAAATCAACCTCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGTATCTTAGTCTT 245919 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | | ||| || || | ||||| |||||| || |||| || Sbjct 245918 GACATTATCGATAGTGTCTGAGCTCTCGACCTCCAAGGTGATGGTTTTCCCAGTCAAGGT 245859 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || || ||||| Sbjct 245858 CTTAACAAATATTTGCAT 245841 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||| ||||| ||||| || |||||||| | | || | |||||| ||||| Sbjct 245588 ATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCGTCCTCAAGCTG 245529 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || || | || || | ||| ||||| || || |||||||||||||| ||| || Sbjct 245528 CTTTCCAGCAAAGATCAGTCTCTGTTGGTCTGGGGGAATGCCTTCCTTGTCT-TGAATTT 245470 Query 133577 TTGCTT-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | | || || | |||| ||||||| | || || || | ||||| ||| || || | Sbjct 245469 TGGTTTTGACATTGTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTCCCAG 245410 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 | || || || || |||||||||||| Sbjct 245409 TGAGGGTCTTAACAAAAATCTGCATG 245384 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| |||||||| || | | ||| | | | ||||| |||||||| | Sbjct 244898 GGTCGACTCCTTCTGGATATTGTAGTCAGCGAGCGTTCGGCCA-TCCTCCAGCTGCTTTC 244840 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || ||||||||||| || || || || ||||| || ||||| || Sbjct 244839 CAGCAAAGATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTATCTTGAATCTTCGTCT 244780 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| | ||| || |||| || | |||||| ||||| |||| Sbjct 244779 TAACATTGTCGATGGTGTCAGAACTCTCAACCTCGAGAGTTATGGTTTTTCCGGTAAGAG 244720 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| || ||||| Sbjct 244719 TCTTAACGAAGATTTGCAT 244701 >seq958 Length=433838 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| || ||||| ||| | | ||| | | | || |||||||| || || Sbjct 311933 GTGGATTCCTTCTGAATGTTGTAGTCGGCTAAAGTGCGGCCA-TCTTCGAGCTGTTTTCC 311991 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| || || ||||| || ||||||||||| ||||| |||||| || Sbjct 311992 GGCGAAGATGAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTGTCCTGGATCTTGGCTTT 312051 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | || || | || || || || | ||| | |||||| || || || || Sbjct 312052 GACATTGTCGATGGTATCCGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTTAGGGT 312111 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||| Sbjct 312112 TTTCACGAAGATCTGCAT 312129 >seq2360 Length=898569 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || ||||| ||||||||||| ||| || | | | || || | |||||| || Sbjct 280955 GTAGATTCCTTCTGGATATTGTAATCAGCCAATGTCCGGCCA-TCATCCAACTGCTTCCC 280897 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || ||||| || || ||||| |||||| ||| Sbjct 280896 TGCAAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCCTGAATCTTTGTCTT 280837 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | || | ||||| | | || || || | ||||| |||||| || || ||||| Sbjct 280836 AACGATATCGATAGTGTCAGAGCTTTCGACTTCCAGGGTGATGGTTTTTCCAGTGAGAGT 280777 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 280776 CTTCACGAAAATCTGCAT 280759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483402593164120