Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq37 93.3 1e-13 seq2659 86.0 1e-11 >seq37 Length=625859 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/186 (74%), Gaps = 10/186 (5%) Strand=Plus/Minus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 ||||||||||||| || | ||||| |||||| | || || || |||||||||| Sbjct 122885 GACATTTGAATGATGGGGACTTTGTTCTTTTCAATCGACAGCCCAGTCTCCATAAAATGT 122826 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTG-ACATTTCGATTAAATGTAAG 305424 | || |||| ||| | | | |||| || || | ||| |||||| |||| || | | Sbjct 122825 CCATTATGGGTCACAGAAT-AAAG-ATCATGCCCTATTCTACATTTAGATTGAACTT--G 122770 Query 305425 TGCTTGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACC 305481 | || |||| ||||| ||||| ||||||||||| ||||||||||| |||||||| || Sbjct 122769 T-CTGTTACGTCACCTTACAATGCTGATTTTGATGGTGATGAAATGAACATGCATGTTCC 122711 Query 305482 TCAATC 305487 ||| || Sbjct 122710 TCAGTC 122705 >seq2659 Length=772501 Score = 86.0 bits (94), Expect = 1e-11 Identities = 149/214 (70%), Gaps = 7/214 (3%) Strand=Plus/Plus Query 131796 TTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAAT--TTTTC 131853 |||| ||||| || || |||||| || |||||| |||| | | | ||| ||| | Sbjct 20748 TTAAGAAGAAGGCTGATTGGGCTCTTCGTTGGATT---GATGGTGCAG--AATCATTTGC 20802 Query 131854 TACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGC 131913 | || | | |||||||||||||||||||| || ||||| || || ||| || | Sbjct 20803 TGAGAGGTTAATTGCTTTTGCTTGTGTTGAAGGGATTTTCTTCTCCGGGAGTTTTTGCTC 20862 Query 131914 TATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCAT 131973 ||||| |||||||| |||||||| || ||||| || | | || || || | | || Sbjct 20863 CATCTTCTGGCTTAAAAAGCGTGGGTTAATGCCGGGTTTAACCTTCTCGAACGAGCTGAT 20922 Query 131974 CTCGAGAGATGAAGCATTGCATACTGAATTTGCT 132007 ||| |||| |||| | ||| ||| |||||| Sbjct 20923 ATCGCGAGACGAAGGGCTTCATTGTGACTTTGCT 20956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186766984204493