Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2448 122 6e-23 seq1925 118 7e-22 seq1558 111 1e-19 seq2306 89.7 3e-13 seq958 87.8 1e-12 seq758 87.8 1e-12 seq2360 84.2 1e-11 >seq2448 Length=870776 Score = 122 bits (134), Expect = 6e-23 Identities = 163/224 (73%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||||||| || ||| || || || ||||||||||| | ||||| | | | || || Sbjct 350504 CACCAAATGAAGCGTGGATTCCTTCTGAATGTTGTAATCTGCAAGTGTTCTTCCATCTTC 350445 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 ||||||||| || ||||| || || || || |||||| | || | ||||||||||| Sbjct 350444 CAATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGGATGCCTTCTTTGTCTTG 350385 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || ||| |||| ||| | |||||| |||||| || || | || || |||| Sbjct 350384 GATCTT-GATTTTGACATTGTCGATTGTGTCGGATGATTCGACATCTAAGGTTATGGTTT 350326 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGTGTTT 33762 |||| |||| ||||| || || ||||||||| ||| | |||| Sbjct 350325 TACCAGTTAGGGTTTTCACGAAAATCTGCATATTTGAGGAGTTT 350282 >seq1925 Length=318408 Score = 118 bits (130), Expect = 7e-22 Identities = 175/243 (72%), Gaps = 10/243 (4%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || |||||||| | ||| | |||| || || || |||||| || ||| Sbjct 245395 AAAATCTGCATGCCACCTCTAAGACGGAGAACCAGGTGGAGGGTCGACTCTTTCTGGATG 245336 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| | || ||||| | || || | |||||||||||||| ||||| | |||| Sbjct 245335 TTGTAATCAGCAAGAGTGCGGCCATCCTCAAGCTGTTTTCCGGCAAAGATCAACCTCTGC 245276 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 |||||| | || | |||||| ||||| ||||| |||| ||||| ||| | || || Sbjct 245275 TGATCTGGGGGAATACCTTCCTTGTCTTGGATTTT-GGTTTTAACATTGTCAATTGTATC 245217 Query 33690 ---GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTG 33746 ||| ||| || |||| ||||| || || || || | || || ||||||||||| Sbjct 245216 AGAGCT---TTCAACCTCAAGGGTGATAGTCTTCCCAGTGAGGGTCTTAACAAAGATCTG 245160 Query 33747 CAT 33749 ||| Sbjct 245159 CAT 245157 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| ||||| | || | || || || ||| || || ||||||||||| | Sbjct 245155 CCACCTCTTAAACGAAGAACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGCA 245096 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | ||| ||||| ||||| ||||| | |||||| ||| | || Sbjct 245095 AGAGTGCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGA 245036 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| |||||| |||| |||| ||| | |||||| || || Sbjct 245035 ATACCTTCCTTGTCTTGAATTTT-GGTTTTGACATTGTCAATGGTGTCAGAATTCTCGAC 244977 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || ||||| |||||||| Sbjct 244976 CTCAAGGGTGATAGTCTTCCCAGTGAGGGTCTTAACAAAAATCTGCAT 244929 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| ||||| | ||| | ||| || || ||| || || ||||||||||| | Sbjct 245611 CCACCTCTTAAACGGAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGCA 245552 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | || ||||| ||||| |||| | ||| || ||| | || Sbjct 245551 AGGGTACGCCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAGTCTCTGTTGGTCTGGGGGA 245492 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| |||||| |||| |||| ||| | ||||||| ||| || Sbjct 245491 ATGCCTTCCTTGTCTTGAATTTT-GGTTTTGACATTGTCAATGGTGTCGGAGCTTTCAAC 245433 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || ||||| |||||||| Sbjct 245432 CTCAAGGGTGATGGTCTTCCCAGTGAGGGTCTTAACAAAAATCTGCAT 245385 >seq1558 Length=1070493 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| || | ||| | ||||| || || || ||| || || |||||||| |||| Sbjct 239380 CACCACCCCTGAGACGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 239321 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||| ||||| |||| || | ||||||||||| || || | ||||||||| ||| | | Sbjct 239320 CGAGAGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGAG 239261 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || || || | |||| ||| | |||||| ||||| Sbjct 239260 GGATGCCTTCCTTGTCTTGGATCTT-AGTCTTCACATTGTCGATGGTGTCTGAGGATTCA 239202 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || ||||| || |||| ||||| || || |||||||| Sbjct 239201 ACCTCTAGGGTTATTGTTTTCCCAGTTAGGGTTTTCACGAATATCTGCAT 239152 >seq2306 Length=232912 Score = 89.7 bits (98), Expect = 3e-13 Identities = 166/240 (69%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || || || ||||| || | |||||| || || || ||| ||||| || Sbjct 176547 AAAATCTGCATTCCTCCCCTCAATCGGAGCACCAAGTGAAGGGTTGACTCCTTTTGGATA 176606 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| | || || | | | || |||| || || |||||||||||||| | |||| Sbjct 176607 TTGTAATCCGCAAGAGTCCTTCCATCTTCCAGCTGCTTGCCGGCAAAAATCAACCTCTGC 176666 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || ||| | || | ||||| ||||| ||||||| | | |||| ||| | |||||| Sbjct 176667 TGGTCTGGGGGGATGCCTTCCTTGTCCTGAATTTTC-GCCTTGACATTGTCGATGGTGTC 176725 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || | || || || || || || || || || || || |||||||| Sbjct 176726 CGAACTCTCAACCTCCAGGGTAATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCAT 176785 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || || | ||| | ||| | || ||||| ||| || || |||||||| || | | Sbjct 177243 CCTCCCCTAAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCG 177302 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | || |||||||| || |||| | ||||| ||| | || Sbjct 177303 AGGGTTCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGCCTTTGCTGGTCTGGGGGA 177362 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | || || ||||| |||||| || | | | |||| ||||||| |||||| Sbjct 177363 ATTCCCTCCTTGTCTTGAATTTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTCCAC 177421 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || ||||||| ||||| |||||||||||||| Sbjct 177422 TTCGAGGGTGATTGTCTTTCCTGTTAGGGTTTTGACAAAGATCTGCAT 177469 >seq958 Length=433838 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | || | || |||||| || || || |||||||| |||| Sbjct 311901 CACCACCACGAAGACGAAGAACAAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCGG 311960 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | ||||| | || || | ||||||||||| || || | ||| || || ||| | | Sbjct 311961 CTAAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTG 312020 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||||||||| || || | || |||| ||| | ||| || ||||| Sbjct 312021 GGATGCCTTCTTTGTCCTGGATCTT-GGCTTTGACATTGTCGATGGTATCCGAGGATTCG 312079 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || |||||||| |||| ||||| || ||||||||||| Sbjct 312080 ACTTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 312129 >seq758 Length=475707 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | || | || ||||| || || || |||||||| |||| Sbjct 367575 CACCACCACGAAGACGAAGAACAAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCGG 367634 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | ||||| |||| || | || |||||||| ||||| | || || || ||| | | Sbjct 367635 CTAAAGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAAATGAGGCGTTGTTGGTCTGGTG 367694 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||||||||| || || || || |||| ||| | ||||| ||||| Sbjct 367695 GGATTCCTTCTTTGTCTTGGATCTT-TGCTTTGACATTGTCGATTGTGTCCGAGGATTCT 367753 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || |||||||| |||| ||||| || ||||||||||| Sbjct 367754 ACCTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 367803 >seq2360 Length=898569 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || |||||||| | |||||||| ||||| ||| || || ||||| || || | Sbjct 280758 ACCTCCCCTCAAACGGAGAACCAAATGCAGAGTAGACTCCTTCTGAATGTTATAGTCTGC 280699 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | || || || || ||||| | | |||||| ||| | || Sbjct 280698 AAGAGTCCGGCCATCCTCAAGCTGCTTCCCTGCGAAAATAAGCCTCTGCTGGTCTGGTGG 280639 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | || ||||| || || || ||| | |||| ||| ||||||| | ||| | Sbjct 280638 GATCCCCTCTTTATCCTGTATCTT-TGTCTTCACATTCTCAATGGTGTCGGAAGTTTCAA 280580 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || ||||| || ||||| | || || ||||||||||||||| Sbjct 280579 CTTCCAAGGTAATCGTCTTGCCTGTCAGAGTCTTGACAAAGATCTGCATA 280530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328691929680960