Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq1325 497 3e-136 seq1658 473 4e-129 >seq1325 Length=385796 Score = 497 bits (550), Expect = 3e-136 Identities = 700/969 (72%), Gaps = 13/969 (1%) Strand=Plus/Plus Query 19526 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 19585 || || ||| |||||||| |||| |||||||| ||||||| || || ||| Sbjct 7006 ACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCAAC-CTTATTGAC 7064 Query 19586 GCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCAT 19644 || | |||| || ||| | || |||||||| ||||| | ||| || |||||||| || Sbjct 7065 TGCAACTTCTGTATTTATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGTAT 7124 Query 19645 CCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGT 19704 || |||| || ||||| || ||||| |||||||| || || ||||| ||| | | Sbjct 7125 TCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGCCATTAT 7184 Query 19705 TCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTT 19762 ||| | | ||| || || || | ||||| || ||||| |||||||| || || Sbjct 7185 TCCTACTTCTGCA--GCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTT 7242 Query 19763 GATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGC 19822 ||||| ||| | |||||||| || || | |||| | || | |||| | |||| Sbjct 7243 GATGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGGT 7302 Query 19823 ATCT-ATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTG 19881 | ||| ||| ||||| || |||||||||||||| | || || || ||| | ||||| Sbjct 7303 GTAGCATG-TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTG 7361 Query 19882 GATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACC 19940 |||| |||||| || || |||||||||||||| || ||| || ||||| | |||||| Sbjct 7362 GATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGTTGT-TTTCTTGATCTACC 7420 Query 19941 CGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACT 20000 ||||||| || ||||| || |||| ||||||| | || ||||| |||| ||||||| Sbjct 7421 TAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACT 7480 Query 20001 ACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTG 20060 ||| | |||||||| || || || ||||| || ||||| || || | |||| | |||| Sbjct 7481 TTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTG 7540 Query 20061 TGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCT 20120 | |||||||| |||| || || || | ||||| ||||| ||||| |||| || | || Sbjct 7541 TAGCTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCATGGTTC-CTTGGTAACTTCT 7599 Query 20121 CGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAA 20179 | ||| | | || || || || | ||| | || | ||||||| || ||||| Sbjct 7600 AGTTTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGCAA 7659 Query 20180 GAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAA 20239 || ||||| || ||||| || ||||| ||||||||||| || || || |||||||| ||| Sbjct 7660 GAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCAA 7719 Query 20240 TACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTA 20299 || ||| ||||||||| |||||| ||| ||||||| | ||||| ||||| || ||| Sbjct 7720 TATGCTAGTTTCAACAACTCTCGTTCTTTAC-CTTCTTCTTAGCTGCTTGGCCTGTAGTA 7778 Query 20300 GGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAAC 20359 || |||||||| |||| || || || ||| ||||| || || | || |||||||| Sbjct 7779 GGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAAT 7838 Query 20360 TTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTC 20419 || ||||| || | | || | | |||||||| ||| ||||||||||||| || | Sbjct 7839 TTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACTTGGGCTGATATCATT 7898 Query 20420 AATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTT 20479 || | |||||| | || | || || ||||||||||| ||||||||||||||||| | Sbjct 7899 AACCATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCAA 7958 Query 20480 GACCTTGCC 20488 ||||| ||| Sbjct 7959 GACCTAGCC 7967 >seq1658 Length=355568 Score = 473 bits (524), Expect = 4e-129 Identities = 696/974 (71%), Gaps = 26/974 (3%) Strand=Plus/Minus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 |||||||||||| |||| |||||||| ||||||| || | || ||| || | Sbjct 187897 AACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACTGCAAC 187839 Query 19592 ATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 |||| || ||||| || |||||||| ||||| | | | || |||||||| || || || Sbjct 187838 TTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGATATTGATGGTATTCGTGA 187779 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGA- 19709 ||| || ||||| || ||||| ||||| || || || ||||| || | |||| | Sbjct 187778 ACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTCGGGTACCATTATTCCTAC 187719 Query 19710 ----GCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGAT 19765 |||| || | || | ||||| || ||||| || ||||| | ||||| Sbjct 187718 TTTTGCAGT--TG---TAGGGTTGCACTTTTATCCAATATGAGAAGCGGCGTTGGTTGAT 187664 Query 19766 GAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATC 19825 || ||| | |||||||| || || | |||| | || | ||||| | |||| | Sbjct 187663 GAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTA 187604 Query 19826 T-ATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGAT 19884 ||| ||| ||||| || |||||||||||||| | || ||||| ||| | |||||||| Sbjct 187603 GCATG-TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGAT 187545 Query 19885 TTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGT 19943 | |||||| || | |||| | ||||||| || |||| || ||||| | ||||||| Sbjct 187544 TGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGT-TTTCTTGATCTACCCAA 187486 Query 19944 TTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACA 20003 ||||||| || || || | |||| ||||||| | | ||||| ||||| ||||||| | Sbjct 187485 TTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTTA 187426 Query 20004 TGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGG 20063 || | |||||| | || || || ||||| || ||||| || || |||||| | ||||| | Sbjct 187425 TGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAG 187366 Query 20064 CTGGTG--------TATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTAC 20115 |||||| ||||||| | || || | ||||| ||||| ||||| |||| || Sbjct 187365 CTGGTGACCTGGTGTATTCGGCCGCTCTCTTTCTAGTGCTATGCATGGTTC-CTTGGTAA 187307 Query 20116 GTCCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTG 20174 | || | ||| | | || || || ||| | ||| | || | ||||||| || | Sbjct 187306 TTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAGGGTTACAGATTCG 187247 Query 20175 GGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCT 20234 ||||||| ||||| || ||||| || ||||| ||||||||||| || | || ||||||| Sbjct 187246 GGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGCCCGATTGATCT 187187 Query 20235 TCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGG 20294 | ||||| || ||||||| | |||||| ||||||||||| | ||||| ||||| | Sbjct 187186 TTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTG 187127 Query 20295 TGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTT 20354 | ||||| |||||||| ||| || || || ||| ||||| || || | || |||| Sbjct 187126 TAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTT 187067 Query 20355 TCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACA 20414 |||| || ||||| || | | || | | |||||||| ||| ||||||||||||| | Sbjct 187066 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 187007 Query 20415 TTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCC 20474 | | || |||||||| || || | || || ||||||||||| |||||||||||||||| Sbjct 187006 TCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCC 186947 Query 20475 CACTTGACCTTGCC 20488 | || ||||| ||| Sbjct 186946 CTCTAGACCTAGCC 186933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148823474998554