Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq1325 439 7e-119 seq1658 417 2e-112 >seq1325 Length=385796 Score = 439 bits (486), Expect = 7e-119 Identities = 677/955 (71%), Gaps = 11/955 (1%) Strand=Plus/Plus Query 28654 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 28713 || || ||| |||||||| |||| |||||||| ||||||| || || ||| Sbjct 7006 ACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCAAC-CTTATTGAC 7064 Query 28714 GCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCAT 28772 || | |||| || ||| | || |||||||| || || | ||| || |||||||| || Sbjct 7065 TGCAACTTCTGTATTTATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGTAT 7124 Query 28773 CCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGT 28832 || |||| ||| | || ||| || || |||||||| || || ||||| ||| | | Sbjct 7125 TCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGCCATTAT 7184 Query 28833 ACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTT 28890 || | | ||| || || || | ||||| || ||||| |||||||| || || Sbjct 7185 TCCTACTTCTGCA--GCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTT 7242 Query 28891 GATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGC 28950 ||||| ||| | |||||||| || || | |||| | || | |||| | |||| Sbjct 7243 GATGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGGT 7302 Query 28951 GTCT-ATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTG 29009 || ||| ||| ||||| || |||||||||||||| | || || || ||| | || || Sbjct 7303 GTAGCATG-TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTG 7361 Query 29010 GATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCC 29069 |||| ||| ||||| |||||||| || |||||||| ||| |||||| | |||||| Sbjct 7362 GATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGTTGTTTTCTTGATCTACCT 7421 Query 29070 ATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTA 29129 | | |||||||| ||| || | |||||| | || || || | || ||||||| Sbjct 7422 AATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTT 7481 Query 29130 CATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGT 29189 ||| | || ||||| || || || ||||| || ||||| || || | |||| | || || Sbjct 7482 TATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGT 7541 Query 29190 TGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTC 29249 ||||| ||||||| ||||| || | |||||| ||||| ||||| |||| | | || Sbjct 7542 AGCTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCATGGTTC-CTTGGTAACTTCTA 7600 Query 29250 GCTTG-TGCGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAG 29308 | ||| | | || || || || | ||| || | ||||||| || | |||| Sbjct 7601 GTTTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAG 7660 Query 29309 AAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAAT 29368 | ||||| |||||||| || ||||| ||||| ||||| || || || |||||||| |||| Sbjct 7661 AGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCAAT 7720 Query 29369 ATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAG 29428 ||||| |||||| || |||||| ||| ||||||| | ||||| ||||| || |||| Sbjct 7721 ATGCTAGTTTCAACAACTCTCGTTCTTTAC-CTTCTTCTTAGCTGCTTGGCCTGTAGTAG 7779 Query 29429 GGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACT 29488 | |||||||| |||| || || || ||| ||||| || || | || ||||| || | Sbjct 7780 GTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATT 7839 Query 29489 TTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCA 29548 | ||||| || | | || | | |||||||| ||| |||||||||||||| | | | Sbjct 7840 TCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACTTGGGCTGATATCATTA 7899 Query 29549 ATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCC 29603 | | |||||| | || | ||||| |||||||| |||||||||||||||||||| Sbjct 7900 ACCATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCC 7954 >seq1658 Length=355568 Score = 417 bits (462), Expect = 2e-112 Identities = 681/972 (70%), Gaps = 24/972 (2%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 |||||||||||| |||| |||||||| ||||||| || | || ||| || | Sbjct 187897 AACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACTGCAAC 187839 Query 28720 ATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 |||| || ||||| || |||||||| || || | | | || |||||||| || || || Sbjct 187838 TTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGATATTGATGGTATTCGTGA 187779 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGA- 28837 |||||| | || ||| || || ||||| || || || ||||| || | | || | Sbjct 187778 ACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTCGGGTACCATTATTCCTAC 187719 Query 28838 ----GCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGAT 28893 |||| || | || | ||||| || ||||| || ||||| | ||||| Sbjct 187718 TTTTGCAGT--TG---TAGGGTTGCACTTTTATCCAATATGAGAAGCGGCGTTGGTTGAT 187664 Query 28894 GAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTC 28953 || ||| | |||||||| || || | |||| | || | ||||| | |||| || Sbjct 187663 GAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTA 187604 Query 28954 T-ATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGAT 29012 ||| ||| ||||| || |||||||||||||| | || ||||| ||| | || ||||| Sbjct 187603 GCATG-TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGAT 187545 Query 29013 TTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATT 29072 | ||| ||||| | ||||| | |||||||| |||| |||||| | |||||||| | Sbjct 187544 TGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTTTCTTGATCTACCCAAT 187485 Query 29073 CGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACAT 29132 |||||||| ||| || | |||||| | | || || || || ||||||| || Sbjct 187484 TGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTTAT 187425 Query 29133 GCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGC 29192 | | || ||| | || || || ||||| || ||||| || || |||||| | || || || Sbjct 187424 GATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 187365 Query 29193 TGGAG--------TGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACG 29244 ||| | | ||||| |||| || | |||||| ||||| ||||| |||| | Sbjct 187364 TGGTGACCTGGTGTATTCGGCCGCTCTCTTTCTAGTGCTATGCATGGTTC-CTTGGTAAT 187306 Query 29245 TCCTCGCTTG-TGCGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGG 29303 | || | ||| | | || || || ||| | ||| || | ||||||| || || Sbjct 187305 TTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAGGGTTACAGATTCGG 187246 Query 29304 ACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTT 29363 ||||| ||||| |||||||| || ||||| ||||| ||||| || | || |||||||| Sbjct 187245 GCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGCCCGATTGATCTT 187186 Query 29364 CCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGT 29423 |||||| || |||||| | |||||| ||||||||||| | ||||| ||||| || Sbjct 187185 TCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGT 187126 Query 29424 GGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTT 29483 ||||| |||||||| ||| || || || ||| ||||| || || | || ||||| Sbjct 187125 AGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTT 187066 Query 29484 TAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGT 29543 || || ||||| || | | || | | |||||||| |||||||||||||||||| | Sbjct 187065 CAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATAT 187006 Query 29544 TCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCC 29603 | || || |||||||| || | ||||| |||||||| |||||||||||||||||||| Sbjct 187005 CATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCC 186946 Query 29604 ACTTGATCTGGC 29615 || || || || Sbjct 186945 TCTAGACCTAGC 186934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146660352396498