Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq1325 526 6e-145 seq1658 504 2e-138 >seq1325 Length=385796 Score = 526 bits (582), Expect = 6e-145 Identities = 711/977 (73%), Gaps = 13/977 (1%) Strand=Plus/Plus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| ||| | |||||| || | ||| |||||||||| || |||||||| || Sbjct 6985 TTCTGTAACTTGATAACCAACACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTG 7044 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 ||||| || || ||| | || ||| | ||| || ||| | |||||||||||||| | Sbjct 7045 ATGATCCCAAC-CTTATTGACTGCAACT-TCTGTATTTATTTTAGCCTTCATTGCTGCTC 7102 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 ||| ||||| |||||||| || || || | |||| | || ||| ||||| ||||||| Sbjct 7103 CTCTAGTAGATATTGATGGTATTCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACA 7162 Query 18902 ACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCC 18959 | || || ||||| ||| | |||| | | ||| || || || | ||||| || || Sbjct 7163 ATATTATTTCGGGTGCCATTATTCCTACTTCTGCA--GCTATAGGGTTGCACTTTTATCC 7220 Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGT 19019 ||| |||||||| || ||||||| ||| | |||||||| || || | |||| | Sbjct 7221 AATATGGGAAGCAGCGTCGGTTGATGAGTGGTTATACAACGGAGGTCCTTATGAACTAAT 7280 Query 19020 GGTCTTCCACTTCCTCATTGGCGTCT-ATGCTTACATGGGACGCGAGTGGGAACTTAGCT 19078 || | |||| | |||| || ||| ||| ||||| || |||||||||||||| | Sbjct 7281 TGTTCTAAACTTTTTACTTGGTGTAGCATG-TTATATGGGTCGTGAGTGGGAACTTAGTT 7339 Query 19079 ATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCT 19138 || || || ||||||||||||||| |||||| || |||||||| ||||| || || Sbjct 7340 TCCGTCTGGGTATGCGCCCTTGGATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTA 7399 Query 19139 CTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGG 19198 ||| || ||| | |||| | | |||||||||| |||| || | ||||||| | | Sbjct 7400 CTGTTGTTTTCTTGATCTACCTAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAG 7459 Query 19199 GTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGC 19258 | || | |||| ||||||| ||| |||||||||||||||| || |||||||| |||| Sbjct 7460 GAATCTCTAGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGC 7519 Query 19259 ACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGC 19318 | || || | |||| | ||||| ||||||||||||| || || || | |||||| |||| Sbjct 7520 ATCCATTTCGCATGTTAGGTGTAGCTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGC 7579 Query 19319 ACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAAC 19377 | ||||| |||| || | || | ||| | | ||||| || || | | |||| || Sbjct 7580 ATGGTTC-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACATAAAATGAATCTGCTAAT 7638 Query 19378 TATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTAT 19437 | || |||| || ||||||| ||||| |||||||| ||||| ||||||||||| ||| Sbjct 7639 GAGGGTTACAGATTCAGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTAT 7698 Query 19438 TTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTT 19497 || || || | || || || || || |||||||| |||||| ||| ||||| Sbjct 7699 TTCGGCCGATTGATCTTTCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC-CTTCTTC 7757 Query 19498 TTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCA 19557 || |||||||||||||| || || ||||||||| | || | || | || || ||||| Sbjct 7758 TTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCC 7817 Query 19558 TTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATT 19617 |||||||| ||||| || || || ||||| || | |||| | | |||||||| ||| Sbjct 7818 TTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATT 7877 Query 19618 GATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGT 19677 ||||||||||||| || | || | ||||||| | || | || || ||||| |||||| Sbjct 7878 CATACTTGGGCTGATATCATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACGT 7937 Query 19678 AATGCTCATAACTTCCC 19694 ||||||||||||||||| Sbjct 7938 AATGCTCATAACTTCCC 7954 >seq1658 Length=355568 Score = 504 bits (558), Expect = 2e-138 Identities = 710/986 (72%), Gaps = 26/986 (3%) Strand=Plus/Minus Query 18732 CTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTCC 18791 |||| |||| || || || |||||||||||||| || |||||||| ||||||| || Sbjct 187916 CTGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCC 187857 Query 18792 GTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGTA 18849 | || ||| | || ||| | ||| || ||||| |||||||||||||| |||| || Sbjct 187856 -TACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTA 187799 Query 18850 GACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATA 18909 || |||||||| || || || |||||| | || ||| ||||| ||||| || || || Sbjct 187798 GATATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATT 187739 Query 18910 TCGGGAGCCGTCGTTCCGA-----GCAGCAATGCCATCGGACTACACTTCTACCCAATTT 18964 ||||| || | |||| | |||| || | || | ||||| || ||||| | Sbjct 187738 TCGGGTACCATTATTCCTACTTTTGCAGT--TG---TAGGGTTGCACTTTTATCCAATAT 187684 Query 18965 GGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCT 19024 | ||||| | ||||||| ||| | |||||||| || || | |||| | || Sbjct 187683 GAGAAGCGGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTC 187624 Query 19025 TCCACTTCCTCATTGGCGTCT-ATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGA 19083 | ||||| | |||| || ||| ||| ||||| || |||||||||||||| | || Sbjct 187623 TACACTTTTTACTTGGTGTAGCATG-TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 187565 Query 19084 CTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCG 19143 ||||| ||||||||||||||| |||||| || | ||||| |||| || || |||| Sbjct 187564 CTAGGTATGCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCT 187505 Query 19144 GTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATT 19203 || ||| | |||| ||| |||||||||| ||| || | ||||||| | | || Sbjct 187504 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATC 187445 Query 19204 AGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCG 19263 |||||| ||||||| ||| |||||||| ||||||| || |||||||| ||||| || Sbjct 187444 TCTGGTACTTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCA 187385 Query 19264 TTCCACATGCTCGGTGTCGCTGGTG--------TGTTCGGCGGGTCACTATTTAGTGCGA 19315 || |||||| | ||||| ||||||| | |||||| | || || | |||||| | Sbjct 187384 TTTCACATGTTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCTTTCTAGTGCTA 187325 Query 19316 TGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAG 19374 |||| ||||| |||| || | || | ||| | | ||||| || ||| | | |||| Sbjct 187324 TGCATGGTTC-CTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCT 187266 Query 19375 AACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGG 19434 || | || |||| || |||||||| ||||| |||||||| ||||| ||||||||||| Sbjct 187265 AATGAGGGTTACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGT 187206 Query 19435 TATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTC 19494 ||||| | || | || || || || | |||||| | |||||| |||| ||| Sbjct 187205 TATTTCGCCCGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTC 187146 Query 19495 TTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATG 19554 || || |||||||||||||| || || ||||||||| || | || | || || ||| Sbjct 187145 TTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATG 187086 Query 19555 GCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTC 19614 || |||||||| ||||| || || || ||||| || | |||| | | |||||||| Sbjct 187085 GCCTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTA 187026 Query 19615 ATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAA 19674 ||| ||||||||||||| || | || ||||||||||| || | || || ||||| ||| Sbjct 187025 ATTAATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAA 186966 Query 19675 CGTAATGCTCATAACTTCCCACTTGA 19700 |||||||||||||||||||| || || Sbjct 186965 CGTAATGCTCATAACTTCCCTCTAGA 186940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141143749784154