Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2659 147 3e-29 >seq2659 Length=772501 Score = 147 bits (162), Expect = 3e-29 Identities = 355/529 (67%), Gaps = 19/529 (4%) Strand=Plus/Plus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || |||| | || |||||||||||| |||||| | || || || || Sbjct 20382 TGTTCCCAATTGAATACCCACAAATCTGGGAAATGTACAAAAAAG-CTGAAGCTTCGTTC 20440 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTC--CACTGGGT----GTCGCTG 1455866 ||||| ||||| || ||||| || | | | | || ||||||| ||| | Sbjct 20441 TGGACTGCCGAAGAAGTCGATCTTTCA--CAAGATGTTCGTCACTGGGAAACCGTCT-TA 20497 Query 1455867 AGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGG 1455926 | | |||||| | |||||||||| ||| |||| ||||| || |||||| || || Sbjct 20498 ACCTCCGACGAACAGCATTTCATCACCCACATCCTTGCCTTCTT-CGCCGCATCTGACGG 20556 Query 1455927 CATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACG 1455986 ||| || |||||| || ||||| | || |||||||||||||| | | || || || Sbjct 20557 CATAGTTCTCGAGAATCTCGCCGGAAGATTCATGAAAGAGGTCCAGGTTGCTGAAGCTCG 20616 Query 1455987 TTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCT 1456046 || || || ||||| |||||||| |||||||| |||||||||| ||||| || || Sbjct 20617 CGCTTTCTATGGCTTCCAAATCGCCATTGAAAACATTCACTCTGAAATGTACTCTCTTCT 20676 Query 1456047 GATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACAC 1456106 | || || || |||| || | | || ||| || ||||| || || || || Sbjct 20677 TTTAGAAACTTATATCAAAGATTCTAACCTTAAAACCCATCTTTTTCGTGCAATTGAAAC 20736 Query 1456107 GGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCT 1456166 | || | || | ||| ||||| || ||||| | ||||| || || Sbjct 20737 TATCCCTTGTGTTAAGAAGAAGGCTGATTGGGCTCTTCGTTGGAT------TGATGGTGC 20790 Query 1456167 CGACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGG 1456224 || | ||||| ||| || | | | ||||| | || || || || || ||||| || Sbjct 20791 AGAATCATTTGCTGAGAGGTTAATTGCTTTTGCTTGTGTTGAAGGGATTTTCTTCTCCGG 20850 Query 1456225 CAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGT 1456273 ||||| ||| ||||||| ||||| || ||||| || | ||||| ||| Sbjct 20851 GAGTTTTTGCTCCATCTTCTGGCTTAAAAAGCGTGGGTTAATGCCGGGT 20899 Score = 87.8 bits (96), Expect = 3e-11 Identities = 151/212 (71%), Gaps = 7/212 (3%) Strand=Plus/Plus Query 1456532 GAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGGC 1456591 || || ||||| |||||| |||||| || | || |||| |||||| ||| | || Sbjct 21020 GATGCAGTCGATATCGAGCGAGAGTTCGTAACTGATGCGCTTCCGGTGAAGCTGGTTGGG 21079 Query 1456592 ATGAAC-GCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCG 1456650 |||||| | | ||| ||| | ||||||||||| ||| || || ||| | ||| | || Sbjct 21080 ATGAACTGTGA--GCTGATGAGTCAGTACATTGAGTTT-GTTGCAGACAGACTGTTGGCT 21136 Query 1456651 GCGCTCGGCTGCGGAGAAGCACTACCGGACGGCC-AACCCGTTCCCATGGATGGAGTTGA 1456709 |||||||| | || | ||| ||| ||| | ||||| ||| ||||||||||||| Sbjct 21137 GCGCTCGGGTACGAA-AAGGTTTAC-GGAGTTCAGAACCCATTCGATTGGATGGAGTTGA 21194 Query 1456710 TCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 |||| || | || ||||| || || || ||| Sbjct 21195 TCTCTCTTCAAGGGAAGACTAATTTCTTTGAG 21226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177520590612106