Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1925 138 1e-27 seq2306 127 2e-24 seq1558 104 2e-17 seq2770 95.1 1e-14 seq2360 93.3 4e-14 seq758 89.7 5e-13 seq2448 82.4 7e-11 seq2371 82.4 7e-11 >seq1925 Length=318408 Score = 138 bits (152), Expect = 1e-27 Identities = 149/196 (76%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||||||||| || ||||| || ||| |||| |||| ||||||||| ||||| Sbjct 246031 TCCTTCTGAATGTTGTAGTCTGCCAAAGTGCGCCCGTCCTCCAACTGCTTACCAGCAAAA 245972 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| ||||||||| | ||||| | ||||||||| ||||| ||| | | | Sbjct 245971 ATCAACCTCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGTATCTTAGTCTTGACATTA 245912 Query 35666 GCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 | | ||||| |||| || ||||||| ||||| ||||| || ||||| || || Sbjct 245911 TCGATAGTGTCTGAGCTC---TCGACCTCCAAGGTGATGGTTTTCCCAGTCAAGGTCTTA 245855 Query 35723 ACAAATATCTGCATTC 35738 |||||||| ||||||| Sbjct 245854 ACAAATATTTGCATTC 245839 Score = 116 bits (128), Expect = 3e-21 Identities = 167/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| || | ||| | | |||||| || | ||| |||||||||||||||||| || | Sbjct 245841 TTCCTCCTCTTAAACGAAGCACCAAGTGAAGTGTAGACTCCTTTTGAATGTTGTAGTCTG 245782 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | | ||| | | | || || |||||||| || ||||| ||||| | ||||| || | | Sbjct 245781 CAAGGGTCCTCCCATCCTCGAGCTGCTTCCCTGCAAAGATCAATCTTTGCTGATCTGGGG 245722 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATT 35684 ||| || |||||| ||| ||||| ||| | | | | | ||||| |||| | Sbjct 245721 GAATGCCCTCCTTATCCTGAATCTTAGCCTTGACATTGTCGATGGTGTCTGAGCTC---T 245665 Query 35685 CCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | ||||||| ||||| ||||| || |||||||| || || || || ||||||| Sbjct 245664 CAACCTCCAAAGTGATAGTTTTCCCAGTCAAAGTCTTGACGAAAATTTGCATTC 245611 Score = 100 bits (110), Expect = 3e-16 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| | ||| | | ||| | ||| | || |||||| |||||||||||||| | Sbjct 245613 TTCCACCTCTTAAACGGAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAG 245554 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | | ||| ||| |||| || |||||||| || ||||| |||| | ||| ||||| | | Sbjct 245553 CAAGGGTACGCCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAGTCTCTGTTGGTCTGGGG 245494 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGA-GTTG-CCACCGTGTCGCTCGATTC 35685 ||| || ||||||| | ||| ||||| || || ||| | | |||||| ||| Sbjct 245493 GAATGCCTTCCTTGT-CTTGA-ATTTTGGTTTTGACATTGTCAATGGTGTCGGAGCTTTC 245436 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | ||||| || || || || | || || ||||| |||||||| Sbjct 245435 AACCTCAAGGGTGATGGTCTTCCCAGTGAGGGTCTTAACAAAAATCTGCAT 245385 >seq2306 Length=232912 Score = 127 bits (140), Expect = 2e-24 Identities = 147/197 (75%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| |||||||||||||| || | ||| ||| | || || ||||||||||| ||||| Sbjct 176366 CTCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTCGAGCTGCTTACCAGCAAA 176425 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | || | | |||||||||| ||||| ||| | | | Sbjct 176426 GATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGAATCTTAGCCTTTACATT 176485 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | || || |||| || ||||||| ||||| || || || ||||| || || Sbjct 176486 ATCAATTGTATCCGAGCTC---TCAACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTT 176542 Query 35722 CACAAATATCTGCATTC 35738 |||||| |||||||||| Sbjct 176543 CACAAAAATCTGCATTC 176559 Score = 102 bits (112), Expect = 7e-17 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||||||| | || |||||| || |||||||| |||||||| || || | || || Sbjct 176804 CACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGACCATCCTC 176863 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||||| || || ||||||| ||||||||| | |||| | ||||||||| Sbjct 176864 GAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTG 176923 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGT 35703 ||||| ||| | | | | | ||||| |||| || ||||||| || || || Sbjct 176924 AATCTTCGTCTTAACATTGTCAATGGTGTCGGAGCTC---TCAACCTCCAAAGTAATGGT 176980 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || || | || || || || |||||||| Sbjct 176981 CTTCCCGGTAAGGGTCTTGACGAAAATCTGCAT 177013 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | || ||||||||| || |||||||| || | || | | || || Sbjct 176576 CACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCCGCAAGAGTCCTTCCATCTTC 176635 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || ||||| ||||||| ||||||||| | || | || ||||||||| | Sbjct 176636 CAGCTGCTTGCCGGCAAAAATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCC-T 176694 Query 35647 GATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGA---TTCCACCTCCACCGTGATCG 35702 || ||| | ||| | | | | | ||||| ||| || ||||||| || || | Sbjct 176695 GAATTTTCGCCTTGACATTGTCGATGGTGTC---CGAACTCTCAACCTCCAGGGTAATGG 176751 Query 35703 TTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | || || ||||| || || || || |||||||||| Sbjct 176752 TCTTTCCGGTCAAGGTCTTGACGAAAATCTGCATTC 176787 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/200 (71%), Gaps = 7/200 (4%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||| || || | |||||| |||| |||||||| || || || || Sbjct 177506 CTCCTTTTGAATGTTGTAGTCAGCTAGGGTTCGGCCGTCCTCCAGCTGTTTTCCGGCGAA 177565 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||||| | |||| | |||||||| |||||| ||| | | | Sbjct 177566 GATCAGCCTTTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTTAGTCTTGACATT 177625 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||||| ||| || ||||| | ||||| || || || || | || || Sbjct 177626 GTCAATGGTGTCAGAACTC---TCAACCTCGAGAGTGATGGTCTTTCCAGTAAGGGTCTT 177682 Query 35722 CACAAATATCTGCATTCTGT 35741 |||||| || |||| ||||| Sbjct 177683 CACAAAGATTTGCA-TCTGT 177701 >seq1558 Length=1070493 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||||| | || || |||| || ||||| || || || || Sbjct 239343 CTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAA 239284 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | ||| | || |||||||| |||||| ||||| | | Sbjct 239283 GATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTAGTCTTCACATT 239224 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| ||||| ||||| | || || ||||| || || | |||||||| Sbjct 239223 GTCGATGGTGTCTGAGGATTCAACCTCTAGGGTTATTGTTTTCCCAGTTAGGGTTTTCAC 239164 Query 35725 AAATATCTGCAT 35736 ||||||||||| Sbjct 239163 GAATATCTGCAT 239152 >seq2770 Length=737149 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/224 (70%), Gaps = 7/224 (3%) Strand=Plus/Plus Query 35518 TAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCG 35577 ||| | || |||||| | | ||| || |||||| || |||||||| || | ||| | Sbjct 636078 TAAACGCAGCACCAAGTAAAGGGTAGACTACTTTTGGATATTGTAATCCGCAAGGGTCCT 636137 Query 35578 CTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTC 35637 | | || || |||||||| || ||||||||||||| ||||||||| |||| | || Sbjct 636138 CCCATCATCAAGCTGCTTCCCAGCAAATATCAACCTTTGCTGGTCCAGGGGAATACCTTC 636197 Query 35638 CTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCCACCTCCAC 35694 ||| ||| ||||| || | | | | | |||||| |||| || ||||||| Sbjct 636198 CTTATCCTGAATCTTGGCTTTGACATTATCAATCGTGTCTGAGCTC---TCAACCTCCAA 636254 Query 35695 CGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || || || || ||| |||| || ||||| || ||||||| Sbjct 636255 AGTTATAGTCTTCCCTGTC-AAGTCTTAACAAAAATTTGCATTC 636297 >seq2360 Length=898569 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| |||||||||||||| ||||||||||| | || |||| ||||| || ||||| Sbjct 281405 TCCTTCTGAATGTTGTAATCAGCCAAGGTTCGACCATCCTCCAATTGCTTCCCTGCAAAG 281346 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | || ||| ||||| | || | | |||||||||| ||||| ||||| | | Sbjct 281345 ATGAGCCTCTGTTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTTGGTCTTCACATTC 281286 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || | || ||||| | ||||| || || || || | || ||||| Sbjct 281285 TCAATTGTATCAGAAGTCTCAACCTCGAGGGTGATAGTCTTCCCAGTGAGGGTCTTCACG 281226 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 281225 AAGATCTGCAT 281215 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| | || |||||||| ||||||||||| ||||| || | | || ||| Sbjct 281195 ACCAAATGCAGGGTTGATTCCTTTTGGATGTTGTAATCAGCCAAAGTCCTGCCATCCTCC 281136 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 |||||||| || ||||| || | || ||||||||| | |||| || |||||| || Sbjct 281135 AGCTGCTTCCCAGCAAAGATAATCCTCTGCTGGTCAGGTGGAATGCCCTCCTTATCTTGA 281076 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTT 35704 ||||| ||||| | | | | || || ||| ||| || || | ||||| ||| Sbjct 281075 ATCTTCGTCTTCACATTGTCAATTGTATCCGAGCT---TTCAACTTCTAGGGTGATAGTT 281019 Query 35705 TTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || || | || || ||||| || ||||| Sbjct 281018 TTCCCAGTAAGCGTCTTAACAAAGATTTGCAT 280987 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| |||||||| ||||| | |||| | || |||| ||||||||| || || Sbjct 280494 CTCCTTTTGGATGTTGTAGTCGGCTAGAGTTCTGCCATCATCCAACTGCTTACCAGCGAA 280435 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAG 35663 || | || ||||||||||| || | | |||||| | | ||| ||| | ||| | | Sbjct 280434 GATGAGCCTCTGCTGGTCCGGTGGTATACCCTCCTTAT-CTTGAATTTTGGTCTTGACAT 280376 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | ||||| | || ||||| | ||||| || || || |||| ||||||| Sbjct 280375 TCTCAATAGTGTCAGATGTCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCA 280316 Query 35724 CAAATATCTGCAT 35736 |||| || ||||| Sbjct 280315 CAAAGATTTGCAT 280303 >seq758 Length=475707 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| ||||| || || || |||| || |||||||| || || || Sbjct 367613 TCCTTCTGGATGTTGTAGTCGGCTAAAGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAA 367672 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | || || ||||| | || | | || ||||| ||||||| || | | | Sbjct 367673 ATGAGGCGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATCTTTGCTTTGACATTG 367732 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| ||||| ||||| | || || ||||||||||| | |||||||| Sbjct 367733 TCGATTGTGTCCGAGGATTCTACCTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACG 367792 Query 35726 AATATCTGCATT 35737 || ||||||||| Sbjct 367793 AAGATCTGCATT 367804 >seq2448 Length=870776 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||||||| | ||| ||||| |||||||||||||| || | |||| | || || Sbjct 350504 CACCAAATGAAGCGTGGATTCCTTCTGAATGTTGTAATCTGCAAGTGTTCTTCCATCTTC 350445 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || || || || ||||| || || || || || || | || | || || ||||| Sbjct 350444 CAATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGGATGCCTTCTTTGTCTTG 350385 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| || | | | | | |||||| ||||| || || | || || ||||| Sbjct 350384 GATCTTGATTTTGACATTGTCGATTGTGTCGGATGATTCGACATCTAAGGTTATGGTTTT 350325 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| || | |||||||| || |||||||| Sbjct 350324 ACCAGTTAGGGTTTTCACGAAAATCTGCAT 350295 >seq2371 Length=888473 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 35547 CCTTT-TGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||||||| | | || || ||||| || |||||||| | || || Sbjct 99675 CCTTTCTGGATGTTGTAATCG-CTAGAGTACGGTCGTCTTCAAGCTGCTTTTCGGCGAAG 99617 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||| | || || | ||| || || ||||| ||| || ||| | ||| Sbjct 99616 ATGAGACGCAGTTGATCGGGTTGAATGCCTTCTTTGTCATGGATTTTAGCCTTGAC-GTT 99558 Query 35666 GCCACCG-TGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | | || || | ||| ||||| | ||||| ||||||||||| | ||||||||| Sbjct 99557 GTTAATGGTATCACTAGTTTCAACCTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTCAC 99498 Query 35725 AAATATCTGCATT 35737 |||||| |||||| Sbjct 99497 AAATATTTGCATT 99485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450776621986040