Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq2002 583 1e-161 seq1325 497 1e-135 seq1658 470 2e-127 >seq2002 Length=1023113 Score = 583 bits (646), Expect = 1e-161 Identities = 732/1003 (73%), Gaps = 1/1003 (0%) Strand=Plus/Plus Query 159389 TGGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 159448 ||||||||||| | | || || || || ||||| ||||||||||| || | || | Sbjct 167438 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGGCTATTGCT-C 167496 Query 159449 TTCCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTTTTATCACGAGTT 159508 || | ||||||| | ||| | || |||||| |||| || || || ||| | || | Sbjct 167497 TTTCGTGTGCTTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 167556 Query 159509 GGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGGTGCTAATTTTCTCACGGCAGCTG 159568 |||| ||||| || | || ||||| || | |||||| ||||| | || || | | Sbjct 167557 GGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGTTGCAATTTCTTAACCGCGACAG 167616 Query 159569 TCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 159628 | || || |||||| || | | | || ||| | | |||| |||||||| || | | Sbjct 167617 TTTCTACTCCTGCTAATAGTTTAGCCCACTCTTTATTGTTACTGTGGGGTCCCGAAGCAC 167676 Query 159629 AAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTTGCTCTCCACG 159688 |||| ||||| || ||||| ||| | || || | ||| | ||||||||||| || | Sbjct 167677 AAGGAGACTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCATG 167736 Query 159689 GTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCGTCTAGTTGGTA 159748 |||| ||||| || |||||||||||| |||| ||||| || ||||||| ||| Sbjct 167737 GTGCTTTCGCACTTATAGGTTTTATGTTACGTCAATTCGAGCTTGCTCGATCCGTTCAAT 167796 Query 159749 TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCC 159808 | || ||||| ||||| || || || |||||||| |||||||||||||| ||||||| Sbjct 167797 TGCGCCCTTATAATGCAATCGCATTATCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCC 167856 Query 159809 TTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAA 159868 | || |||||||| ||||||||| |||||||||||||||||||| || ||||||| | Sbjct 167857 TAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTATAGCAGCTA 167916 Query 159869 TCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATA 159928 | ||| ||||| | | || |||| || || || || ||||| || || || || |||| Sbjct 167917 TATTTCGATTCATTCTCTTTTTTCAAGGGTTTCATAATTGGACACTGAATCCATTTCATA 167976 Query 159929 TGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTGCTACTG 159988 ||||||||||||| ||| || | || | || || | || || || ||||| ||||| | Sbjct 167977 TGATGGGAGTTGCCGGTGTATTGGGCGCCGCTCTACTATGCGCTATTCATGGCGCTACCG 168036 Query 159989 TAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAAGGCGTTTGAGCCTA 160048 |||| || | || |||||||| || || ||||| ||||| ||| ||| | || | Sbjct 168037 TAGAAAATAATTTATTTGAAGACGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAA 168096 Query 160049 CTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCG 160108 | |||| ||||| |||||||| |||||||| || |||||||| ||||| || || || | Sbjct 168097 CCCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTTTG 168156 Query 160109 GTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGG 160168 | ||||| ||||| || || | ||| | ||||| || ||||| ||||| || || | | Sbjct 168157 GCGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCG 168216 Query 160169 GTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCTTCGTGCTTACGATT 160228 || |||||| || |||| | | ||| | ||||| ||||| ||||| || || | Sbjct 168217 GTTTATGGATGAGTGCTCTTGGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATGACT 168276 Query 160229 TCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGACCTTCTACACCAAGA 160288 || | ||||| || | ||||| ||||||||||||||||| || ||||||||||| | Sbjct 168277 TCATTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAA 168336 Query 160289 ACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGATCAACCACATGAAA 160348 | || || || || ||||| |||||||||||||||| || ||||| || ||||||| Sbjct 168337 ATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAA 168396 Query 160349 ACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACT 160391 || |||| ||||||||||| || ||||| | || ||||| || Sbjct 168397 ACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 168439 >seq1325 Length=385796 Score = 497 bits (550), Expect = 1e-135 Identities = 715/999 (72%), Gaps = 7/999 (1%) Strand=Plus/Plus Query 157667 TGGAATAACTTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTC 157726 |||| | |||||| | | | ||||| || || ||| || | ||| |||| ||||| Sbjct 6976 TGGAGTTGCTTCTGTAACTTGATAACCAACACTAAAAACAGTCTTTATATTGGATGGTTT 7035 Query 157727 GGTGTACTGATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCCTTCGT 157785 ||||| ||||||| || || || | |||||||| ||||| || || | |||||| | Sbjct 7036 GGTGTTTTGATGATCCCAACCTTATTGACTGCAACT-TCTGTATTTATTTTAGCCTTCAT 7094 Query 157786 CGCTGCTCCCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTA 157845 |||||||| | || || ||||| || || || |||| ||| | || || || | || Sbjct 7095 TGCTGCTCCTCTAGTAGATATTGATGGTATTCGTGAACTTGTTTCCGGGTCTCTACTTTA 7154 Query 157846 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTT 157905 || ||||| || || || ||||| || |||||| ||| || || || | ||||| Sbjct 7155 CGGAAACAATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTT 7214 Query 157906 CTACCCCATCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCA 157965 || || || ||||||||||| || |||| |||||| | || ||||| ||||||| | Sbjct 7215 TTATCCAATATGGGAAGCAGCGTCGGTTGATGAGTGGTTATACAACGGAGGTCCTTATGA 7274 Query 157966 ACTTGTAGTATTCCACTTCCTGATCGGCATCT-ATGCCTATATGGGACGTGAGTGGGAAC 158024 ||| | || | |||| | | || | ||| |||||||| ||||||||||||| Sbjct 7275 ACTAATTGTTCTAAACTTTTTACTTGGTGTAGCATGT-TATATGGGTCGTGAGTGGGAAC 7333 Query 158025 TCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTG 158084 | || |||| | ||||||||||| ||||| ||| |||||||| ||||| || || | Sbjct 7334 TTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGATGTTGCATATTCAGCTCCGGTTGCAG 7393 Query 158085 CAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGC 158144 | || | || || ||| | |||| | | |||||||| || || |||| ||||| Sbjct 7394 CGGCTACTGTTGTTTTCTTGATCTACCTAATTGGTCAAGGAAGCTTTTCTGATGGTATGC 7453 Query 158145 CTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCC 158204 |||| || |||||| ||||||| |||| ||| |||||||||| || || |||||||||| Sbjct 7454 CTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCC 7513 Query 158205 TTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTG 158264 ||||||| || || | ||| | ||||| ||||| || |||| || ||||||| || Sbjct 7514 TTATGCATCCATTTCGCATGTTAGGTGTAGCTGGTGTGTTCGAAGGCTCTCTTTATAGTG 7573 Query 158265 CTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCA 158323 |||||||||| | || |||| || | | || | ||||| || ||| || || Sbjct 7574 CTATGCATGGTTCCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACATAAAATGAATCT 7632 Query 158324 CAGAACTACGGTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCAT 158383 || | ||||| | ||| | ||||| ||||| || || || || || || || ||| Sbjct 7633 GCTAATGAGGGTTACAGATTCAGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCAT 7692 Query 158384 GGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCAC 158443 || || ||||| || |||||||| ||||| ||| ||||||||||| ||||| || | | Sbjct 7693 GGTTATTTCGGCCGATTGATCTTTCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC-C 7751 Query 158444 TTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACC 158503 |||||| | ||||| |||||||| || || || ||||| || || | || | || Sbjct 7752 TTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACT 7811 Query 158504 ATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGT 158563 ||||| |||||| | || |||||||| |||||||| || | ||||| |||| |||||| Sbjct 7812 ATGGCCTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGT 7871 Query 158564 GTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCAT 158623 || | | || ||||| ||| | | |||| ||| |||||||||||||||||||| Sbjct 7872 GTAATTCATACTTGGGCTGATATCATTAACCATGCTAACTTTGGTATGGAAGTTATGCAT 7931 Query 158624 GAGCGTAACGCACACAACTTCCCACTGGATCTTGCTGCT 158662 || ||||| || || |||||||| | || || || ||| Sbjct 7932 GAACGTAATGCTCATAACTTCCCTCAAGACCTAGCCGCT 7970 >seq1658 Length=355568 Score = 470 bits (520), Expect = 2e-127 Identities = 691/971 (71%), Gaps = 14/971 (1%) Strand=Plus/Minus Query 157703 AACCGTTTGTATGTTGGTTGGTTCGGTGTACTGATGATTCCTACGTTGCTTGCTGCAACT 157762 |||||| | ||| |||| ||||| ||||| ||||||| ||||| || | |||||||| Sbjct 187897 AACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACT 187838 Query 157763 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGCGA 157821 ||||| || || | |||||| | |||||||| | | || ||||| || || || || Sbjct 187837 -TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGATATTGATGGTATTCGTGA 187779 Query 157822 ACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTAG 157881 ||| ||| | || || || | || || || || || || || ||| | || |||||| Sbjct 187778 ACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTCGGGTACCATTATTCCTAC 187719 Query 157882 TTCAAACGCAATCGGTCTCCACTTCTACCCCATCTGGGAAGCAGCATCTCTTGACGAGTG 157941 || | | || | ||||| || || || || ||||| || | |||| ||||| Sbjct 187718 TTTTGCAGTTGTAGGGTTGCACTTTTATCCAATATGAGAAGCGGCGTTGGTTGATGAGTG 187659 Query 157942 GCTGTATAACGGTGGTCCTTTCCAACTTGTAGTATTCCACTTCCTGATCGGCATCT-ATG 158000 | | || ||||||||||||| |||| | || | ||||| | | || | ||| Sbjct 187658 GTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCATG 187599 Query 158001 CCTATATGGGACGTGAGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTG 158060 |||||||| |||||||||||||| || |||| ||||||||||||| ||||| || Sbjct 187598 T-TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGTTG 187540 Query 158061 TAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTC 158120 | ||||||| |||| | || || || | ||| || ||| | |||| || | |||| Sbjct 187539 TTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTTTCTTGATCTACCCAATTGGTC 187480 Query 158121 AAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTG 158180 |||| || | |||| ||||||||| | |||||||||||||| |||| ||| ||| Sbjct 187479 AAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTTATGATTG 187420 Query 158181 TATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGG 158240 ||||| | || || ||||||||||||||||| || || || ||| | ||||| ||||| | Sbjct 187419 TATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTG 187360 Query 158241 --------TATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTC 158292 ||||||| | ||||||| |||||||||||| || | || || || Sbjct 187359 ACCTGGTGTATTCGGCCGCTCTCTTTCTAGTGCTATGCATGGTTC-CTTGGTAATTTCTA 187301 Query 158293 ACTCG-TTCGTGAAACGACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAG 158351 | | || | ||||| || |||| || || || | ||||| | ||||| |||| Sbjct 187300 GTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAGGGTTACAGATTCGGGCAAG 187241 Query 158352 AAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAAT 158411 | ||||| || || || || || || || ||||| || |||| || |||||||| |||| Sbjct 187240 AGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGCCCGATTGATCTTTCAAT 187181 Query 158412 ACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCG 158471 | || |||||| |||| ||||| || ||||||||| | ||||| |||||||| || | Sbjct 187180 ATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAG 187121 Query 158472 GCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACT 158531 | || ||||| | || | || | || ||||| |||||| | || |||||||| | Sbjct 187120 GTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATT 187061 Query 158532 TCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGA 158591 ||||||| || | ||||| |||| |||||||| | || || ||||| ||| | | | Sbjct 187060 TCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATCATTA 187001 Query 158592 ACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTGG 158651 |||| ||| ||||||||||||||||||||||| ||||| || || |||||||| || | Sbjct 187000 ACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAG 186941 Query 158652 ATCTTGCTGCT 158662 | || || ||| Sbjct 186940 ACCTAGCCGCT 186930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573002418483600