Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq1325 504 8e-138 seq2002 489 2e-133 seq1658 484 7e-132 seq936 105 7e-18 seq2301 82.4 9e-11 >seq1325 Length=385796 Score = 504 bits (558), Expect = 8e-138 Identities = 700/971 (72%), Gaps = 11/971 (1%) Strand=Plus/Plus Query 159981 ACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCA 160040 || || ||| | || ||| | || ||||| || || ||||||| ||||| | ||| | Sbjct 7006 ACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCAACCTTATTGACT 7065 Query 160041 GCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCAT 160099 ||||| ||||| || || | |||||| | |||||||| | || || || || || || Sbjct 7066 GCAACT-TCTGTATTTATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGTAT 7124 Query 160100 CCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGT 160159 ||||||| || | || || || | || || ||||| || || || ||||| || | Sbjct 7125 TCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGCCATTAT 7184 Query 160160 TCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGA 160219 ||| |||| || || || | ||||| ||||| || |||||||| || || |||| Sbjct 7185 TCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTTGA 7244 Query 160220 TGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTTATCGGCAT 160279 ||||||| | || ||||| ||||||| |||| | || | |||| | | || | Sbjct 7245 TGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGG--T 7302 Query 160280 CTATGCAT---ATATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTG 160336 || |||| ||||||| ||||||||||||||| | |||| | ||||||||||| || Sbjct 7303 GTA-GCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTG 7361 Query 160337 GATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTATATCC 160396 ||| ||| |||||||| ||||| || || || || ||| ||| ||| | | || | Sbjct 7362 GATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGTTGTTTTCTTGATCTACCT 7421 Query 160397 TTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTA 160456 | |||||||| || || |||| ||||||||| || |||||| ||||||| |||| Sbjct 7422 AATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTT 7481 Query 160457 CATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGT 160516 ||| |||||||||| || || ||||| |||||||||||||| || | |||| | || || Sbjct 7482 TATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGT 7541 Query 160517 TGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTC 160576 ||||| || |||| || ||| | | ||||||||| || | || |||| || Sbjct 7542 AGCTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCATGGTTCCTTGGTAACTT-CTA 7600 Query 160577 ACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAG 160635 | | || | ||||| || ||| || || || | ||||| | ||| | |||| Sbjct 7601 GTTTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAG 7660 Query 160636 AGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAAT 160695 ||||||| || || || || || || || |||||||| ||||| || |||||||| |||| Sbjct 7661 AGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCAAT 7720 Query 160696 ATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTAGTCG 160755 |||| ||||||||||| ||||| || ||||||| | || || ||||||||||| | Sbjct 7721 ATGCTAGTTTCAACAACTCTCGTTC-TTTACCTTCTTCTTAGCTGCTTGGCCTGTAGTAG 7779 Query 160756 GAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACT 160815 | || ||||| |||||| | ||| |||| || ||||| |||||| | || |||||||| | Sbjct 7780 GTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATT 7839 Query 160816 TCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACACCTGGGCAGACGTACTGA 160875 ||||||| || | | ||| |||||||||||||| | | || ||||| || | | | Sbjct 7840 TCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACTTGGGCTGATATCATTA 7899 Query 160876 ATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCG 160935 | | |||| |||||||||||||||||||||| ||||| || || |||||||| | | Sbjct 7900 ACCATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCAAG 7959 Query 160936 ACCTCGCTGCT 160946 |||| || ||| Sbjct 7960 ACCTAGCCGCT 7970 >seq2002 Length=1023113 Score = 489 bits (542), Expect = 2e-133 Identities = 709/993 (71%), Gaps = 7/993 (1%) Strand=Plus/Plus Query 161716 GGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTG 161775 |||| |||||||||||||| || |||||||| || | || ||| | ||||||| | | Sbjct 167456 GGGACCGTTTCGTTTTTGTAGGTTGGTCTGGGCTATTGCT-CTTTCGTGTGCTTATTTCG 167514 Query 161776 CTATTGGCGGTTGGCTTACTGGCACAACTTTCGCAACGAGCTGGTATACCCATGGTCTCG 161835 | | || |||||| |||| || ||||| || | ||| |||||||||||||| | | Sbjct 167515 CCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTGG 167574 Query 161836 CTAGTTCCTATCTTGAGGGT-GCAAACTTTCTTA-CAGCGTCAGTTAGCACTCCAGCTGA 161893 | ||||| ||| | || ||| |||| ||||||| | ||| ||||| ||||| ||| | Sbjct 167575 CCAGTTCTTATTTGGAAGGTTGCAA--TTTCTTAACCGCGACAGTTTCTACTCCTGCTAA 167632 Query 161894 CGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCC 161952 | | | || ||| || || || || |||||||| || || ||||| || || | Sbjct 167633 TAGTTTAGCCCACTCT-TTATTGTTACTGTGGGGTCCCGAAGCACAAGGAGACTTTACTC 167691 Query 161953 GCTGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAA 162012 | ||| ||| | || || || |||| |||||| || || |||||||| ||||| || | Sbjct 167692 GTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCATGGTGCTTTCGCACTTA 167751 Query 162013 TTGGATTCATGCTCCGTCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCCTACAATG 162072 | || || ||| | ||||| || || || || || || | || || || |||| Sbjct 167752 TAGGTTTTATGTTACGTCAATTCGAGCTTGCTCGATCCGTTCAATTGCGCCCTTATAATG 167811 Query 162073 CTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCATTGG 162132 | || || || |||||||| |||||||||||||| || ||||| || || ||| | | Sbjct 167812 CAATCGCATTATCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTAATTTATCCACTAG 167871 Query 162133 GTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGT 162192 ||||||| ||||||| || || || ||||| | ||||| || ||| ||||| | Sbjct 167872 GTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTATAGCAGCTATATTTCGATTCATTC 167931 Query 162193 TGTTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTG 162252 | ||| ||||||| || ||||| ||||| ||||| || || ||||||||||||||||| | Sbjct 167932 TCTTTTTTCAAGGGTTTCATAATTGGACACTGAATCCATTTCATATGATGGGAGTTGCCG 167991 Query 162253 GTATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTAT 162312 || || | || | || || |||| |||||||| || | || || ||||||| |||| Sbjct 167992 GTGTATTGGGCGCCGCTCTACTATGCGCTATTCATGGCGCTACCGTAGAAAATAATTTAT 168051 Query 162313 ACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGGAAGAGA 162372 || || || || ||||| || || ||| ||| | | || || | ||||| | Sbjct 168052 TTGAAGACGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAACCCAAGCCGAAGAAA 168111 Query 162373 CTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTA 162432 ||||||| |||||||| || |||||||| ||||| || || || || |||| ||||| | Sbjct 168112 CTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTTTGGCGTTGCTTTTTCCA 168171 Query 162433 ACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCT 162492 | || | ||| | ||||| || ||||| ||||| || || | ||| |||||| Sbjct 168172 ATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTG 168231 Query 162493 CTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGA 162552 || |||| | | ||| | ||| | ||||| ||||| || || ||| | ||||| | Sbjct 168232 CTCTTGGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATGACTTCATTTCCCAGGAAA 168291 Query 162553 TCAGAGCAGCAGAAGATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTGCTCAATG 162612 || | ||||| ||||||||||| |||||||| |||||||| || || ||||| | || | Sbjct 168292 TCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACG 168351 Query 162613 AAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAG 162672 |||| | ||||| ||| | || || || || || ||||| ||| |||| ||||| | Sbjct 168352 AAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTG 168411 Query 162673 AAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 162705 | || ||||| || | || ||||| ||||||| Sbjct 168412 AGGAGGTTCTACCCCGTGGAAACGCTCTTTAAT 168444 >seq1658 Length=355568 Score = 484 bits (536), Expect = 7e-132 Identities = 711/995 (71%), Gaps = 26/995 (3%) Strand=Plus/Minus Query 159969 TGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCA 160028 ||| ||||| || | ||||| || ||| | || ||||| || || ||||||| || Sbjct 187915 TGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCT 187856 Query 160029 ACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGA 160087 || | ||| | ||||| ||||| || || | |||||| | |||||||| | | || Sbjct 187855 ACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGA 187797 Query 160088 CATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTC 160147 || || || || |||||||| || | || || || | || || || || || || || Sbjct 187796 TATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTC 187737 Query 160148 TGGTGCAGTTGTTCCATCTTCCAACGCAATTG---GTCTTCACTTCTATCCCATCTGGGA 160204 ||| | || |||| ||| ||| ||| | | ||||| ||||| || || || Sbjct 187736 GGGTACCATTATTCCTACTTTT---GCAGTTGTAGGGTTGCACTTTTATCCAATATGAGA 187680 Query 160205 AGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCA 160264 ||| || | ||||||||||| | || ||||||||||||| |||| | || | || Sbjct 187679 AGCGGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACA 187620 Query 160265 CTTCCTTATCGGCATCTATGCAT---ATATGGGACGTGAGTGGGAACTTTCATACCGTTT 160321 ||| | | || | || |||| ||||||| ||||||||||||||| | |||| | Sbjct 187619 CTTTTTACTTGG--TGTA-GCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCT 187563 Query 160322 AGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGT 160381 |||||||||||| ||||| ||| ||||||| |||| | || || || ||||||| Sbjct 187562 AGGTATGCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGT 187503 Query 160382 ATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTC 160441 ||| | | || || | |||||||| || | |||| ||||||||| | ||||| Sbjct 187502 TTTCTTGATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTC 187443 Query 160442 TGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTT 160501 ||||||||| |||| ||| |||||||| | || || ||||| |||||||||||||| || Sbjct 187442 TGGTACTTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATT 187383 Query 160502 CCACATGCTCGGCGTTGCTGGGG--------TATTCGGTGGATCTTTGTTCTC-TGCTAT 160552 |||||| | || || ||||| | ||||||| | ||| | |||| |||||| Sbjct 187382 TCACATGTTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCT-TTCTAGTGCTAT 187324 Query 160553 GCACGGAAGTCTCGTTACTTCCTCACTCG-TTCGTGAAACGACTGAAACAGAGTCACAGA 160611 ||| || || | || || || | | || | ||||| || |||| || || | Sbjct 187323 GCATGGTTC-CTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTA 187265 Query 160612 ACTACGGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTT 160671 | | ||||| | ||||| ||||||||||| || || || || || || || ||||||| Sbjct 187264 ATGAGGGTTACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTT 187205 Query 160672 ACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCT 160731 | |||| || |||||||| |||||| | |||||| |||| ||||| | ||||||| Sbjct 187204 ATTTCGCCCGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCT 187145 Query 160732 TCCTGGCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGG 160791 || | || || ||||||||||| || || ||||| | |||| | ||| |||| || |||| Sbjct 187144 TCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGG 187085 Query 160792 CATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTAC 160851 | |||||| | || |||||||| |||||||| || | | ||| |||||||||||||| Sbjct 187084 CCTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAA 187025 Query 160852 TGAACACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGC 160911 | || || ||||| || | | || |||||| ||||||||||||||||||||||| | Sbjct 187024 TTAATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAAC 186965 Query 160912 GTAACGCACACAACTTCCCACTCGACCTCGCTGCT 160946 |||| || || |||||||| || ||||| || ||| Sbjct 186964 GTAATGCTCATAACTTCCCTCTAGACCTAGCCGCT 186930 >seq936 Length=443095 Score = 105 bits (116), Expect = 7e-18 Identities = 159/225 (71%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 161125 GTACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGG 161184 |||| | || ||||| || ||||||| ||| ||||| | || || ||| | ||||| Sbjct 203472 GTACGTCTTGGATGCTGCTGAAGAGGTAGGGATTGATTTGCCTTACTCGTGTAGGGCTGG 203531 Query 161185 TGCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTC 161244 | ||||| || || || |||| ||| || ||||| | ||||||||||| || || Sbjct 203532 CTCGTGCTCCTCATGCGCCGGTATGCTTAAGTCTGGTACTCTCGACCAGTCTGATCAATC 203591 Query 161245 CTTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTAC 161304 |||||| |||||||||||||| | |||||| || | || |||| ||| || ||| Sbjct 203592 CTTCTTAGATGATGACCAGATAGCTGCTGGATGGGTTCTTACTTGTGCTGCTTACCCTGT 203651 Query 161305 TAGCGATTGTGTGATTCAAACTGAGCAAGAGGAGAATCTGTACTG 161349 ||| ||| | ||| | ||| | | |||||| | || ||||| Sbjct 203652 TAGTGATGTTACCATTGAGACTCACAAGGAGGAGGAGCT-TACTG 203695 >seq2301 Length=244427 Score = 82.4 bits (90), Expect = 9e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 161124 AGTACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTG 161183 ||||||| || ||||| |||| || | || || || | || || || || || | Sbjct 138321 AGTACATCTTGGATGCTGCAGGAGGGAATGGGGTGGACTTGCCTTACTCATGCCGGGCAG 138380 Query 161184 GTGCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGT 161243 | || ||||| || |||| || || | | ||| |||| |||||||| || || || Sbjct 138381 GCGCGTGCTCCTCATGTGTCGGGAAGGTGACTTCTGGTAGTGTAGACCAATCAGATCAAA 138440 Query 161244 CCTTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTA 161303 ||||||||||||||||||||| | || | || | || |||||||| ||||||| Sbjct 138441 GCTTCTTGGATGATGACCAGATGGCTCAAGGGTGGGTTCTCACTTGTGTTGCTTATCCTA 138500 Query 161304 CTAGCGAT 161311 ||| ||| Sbjct 138501 TTAGTGAT 138508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559482927680600