Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq1325 453 1e-122 seq2002 434 1e-116 seq1658 421 8e-113 seq2646 89.7 6e-13 >seq1325 Length=385796 Score = 453 bits (502), Expect = 1e-122 Identities = 677/954 (71%), Gaps = 9/954 (1%) Strand=Plus/Plus Query 181002 ACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCA 181061 || || ||| | || ||| | || ||||| || || ||||||| ||||| | ||| | Sbjct 7006 ACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCAACCTTATTGACT 7065 Query 181062 GCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCAT 181120 |||||| ||||| || || | |||||| | |||||||| | || || || || || || Sbjct 7066 GCAACT-TCTGTATTTATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGTAT 7124 Query 181121 CCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGT 181180 ||||||| || | || || || | || || ||||| || || || ||||| || | Sbjct 7125 TCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGCCATTAT 7184 Query 181181 TCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGA 181240 ||| |||| || || || | ||||| ||||| || |||||||| || || |||| Sbjct 7185 TCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTTGA 7244 Query 181241 TGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCAT 181300 ||||||| | || ||||| ||||||| |||| | || | |||| | | || | Sbjct 7245 TGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGG--T 7302 Query 181301 TTATGCAT---ACATGGGACGTGAATGGGAACTCTCTTACCGCTTAGGTATGCGCCCCTG 181357 || |||| | ||||| ||||| |||||||| || ||| | ||||||||||| || Sbjct 7303 GTA-GCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTG 7361 Query 181358 GATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCC 181417 ||| ||||||||| || ||||| || ||||| || ||| ||| ||| | |||| | Sbjct 7362 GATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGTTGTTTTCTTGATCTACCT 7421 Query 181418 TTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTA 181477 | |||||||| || ||||| | ||||| || || |||||| |||| ||||||| Sbjct 7422 AATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTT 7481 Query 181478 CATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGT 181537 ||| |||| ||||| || ||||||||||| || |||||||| || | |||||| ||||| Sbjct 7482 TATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGT 7541 Query 181538 CGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTC 181597 || ||||| || | || || || | ||||| ||||| ||||| ||||| || ||| Sbjct 7542 AGCTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCATGGTTCCTTGGTAACTTCTAG 7601 Query 181598 ACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGACAAGA 181657 | || | || || || ||| ||| || || | ||||||| ||| | ||||| Sbjct 7602 TTTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAGA 7661 Query 181658 AGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTCCAATA 181717 ||||| || || || || || || || || ||||| || || || |||||||| ||||| Sbjct 7662 GGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCAATA 7721 Query 181718 TGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGG 181777 |||| ||||||||||| ||||| | | ||||||| | || || ||||||||||| || Sbjct 7722 TGCTAGTTTCAACAACTCTCGTTCTTTAC-CTTCTTCTTAGCTGCTTGGCCTGTAGTAGG 7780 Query 181778 AATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTT 181837 || ||||| || || | || | || || ||||| || ||| | ||||| ||||| || Sbjct 7781 TATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATTT 7840 Query 181838 CAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTCAACACCTGGGCAGACGTGCTCAA 181897 |||||| ||| | | || | ||||| ||||| | | || ||||| || | | || Sbjct 7841 CAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACTTGGGCTGATATCATTAA 7900 Query 181898 CCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCC 181951 || ||| | || |||||||| ||||| || || || || || |||||||| Sbjct 7901 CCATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCC 7954 >seq2002 Length=1023113 Score = 434 bits (480), Expect = 1e-116 Identities = 703/1005 (70%), Gaps = 5/1005 (0%) Strand=Plus/Plus Query 182371 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 182430 |||| |||||| | |||| || || || ||||| ||||||||||| || | || | Sbjct 167438 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGGCTATTGCT-C 167496 Query 182431 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 182490 || | ||||||| | ||| | || |||||| |||| || ||| | ||||| || | Sbjct 167497 TTTCGTGTGCTTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 167556 Query 182491 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTA-CGGCAGCT 182549 |||| ||||| || | || ||| ||| | |||||| || ||||||| | || | Sbjct 167557 GGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGTTGCAA-TTTCTTAACCGCGACA 167615 Query 182550 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 182609 || || || |||||| || | | | || ||| | | |||| |||||||| || | Sbjct 167616 GTTTCTACTCCTGCTAATAGTTTAGCCCACTCTTTATTGTTACTGTGGGGTCCCGAAGCA 167675 Query 182610 CAGGG-GAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCA 182668 || || || ||| | || ||||| ||| | || || || |||| ||| || ||||| || Sbjct 167676 CAAGGAGACTTTACT-CGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCA 167734 Query 182669 CGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGCCTGATTGG 182728 ||||| ||||| || || ||||| ||| | | ||||| || |||||||| || Sbjct 167735 TGGTGCTTTCGCACTTATAGGTTTTATGTTACGTCAATTCGAGCTTGCTCGATCCGTTCA 167794 Query 182729 AATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTT 182788 | | | ||||| ||||| || || || |||||||| |||||||| || || ||| || Sbjct 167795 ATTGCGCCCTTATAATGCAATCGCATTATCTGGTCCAATTGCTGTTTTTGTTTCTGTATT 167854 Query 182789 CCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGC 182848 ||| || ||||| | || ||||| |||||| || || || |||||| | || || Sbjct 167855 CCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTATAGCAGC 167914 Query 182849 GATCTTCAGGTTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCCA 182908 || || | ||| | | || |||| || || || || |||||||| || || || || Sbjct 167915 TATATTTCGATTCATTCTCTTTTTTCAAGGGTTTCATAATTGGACACTGAATCCATTTCA 167974 Query 182909 TATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCAC 182968 ||||||||||||||| ||| || |||| | || || || | ||||| ||||| | || Sbjct 167975 TATGATGGGAGTTGCCGGTGTATTGGGCGCCGCTCTACTATGCGCTATTCATGGCGCTAC 168034 Query 182969 AGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATTC 183028 ||||| |||| || | |||||| || || |||||| ||||| || || | | Sbjct 168035 CGTAGAAAATAATTTATTTGAAGACGGTGATGGGGCAAATACATTCCGGGCTTTTAACCC 168094 Query 183029 CACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTT 183088 || || | || || || ||||| ||||| || || || || |||||||| ||||| || Sbjct 168095 AACCCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTT 168154 Query 183089 CGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCAT 183148 || ||||| ||| |||||| ||||||| || ||||||||||| ||||| || || | Sbjct 168155 TGGCGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 168214 Query 183149 GGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGA 183208 ||| | ||| | | || |||| | | || | ||| | || || ||||| ||||| Sbjct 168215 CGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATGA 168274 Query 183209 TTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACAAA 183268 || | || || || | ||||| ||||||||||| || || || |||||||| || Sbjct 168275 CTTCATTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAA 168334 Query 183269 GAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACATGA 183328 || || || | || ||||| | ||||||||| |||| || ||||| || ||||| Sbjct 168335 AAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 168394 Query 183329 AAACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373 |||| | || |||||||| || |||||||| | || ||||| || Sbjct 168395 AAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 168439 >seq1658 Length=355568 Score = 421 bits (466), Expect = 8e-113 Identities = 692/992 (70%), Gaps = 22/992 (2%) Strand=Plus/Minus Query 180990 TGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCA 181049 ||| ||||| || | ||||| || ||| | || ||||| || || ||||||| || Sbjct 187915 TGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCT 187856 Query 181050 ACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGA 181108 || | ||| | |||||| ||||| || || | |||||| | |||||||| | | || Sbjct 187855 ACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGA 187797 Query 181109 CATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTC 181168 || || || || |||||||| || | || || || | || || || || || || || Sbjct 187796 TATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTC 187737 Query 181169 TGGTGCAGTTGTTCCATCTTCCAACGCAATTG---GTCTTCACTTCTATCCCATCTGGGA 181225 ||| | || |||| ||| ||| ||| | | ||||| ||||| || || || Sbjct 187736 GGGTACCATTATTCCTACTTTT---GCAGTTGTAGGGTTGCACTTTTATCCAATATGAGA 187680 Query 181226 AGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCA 181285 ||| || | ||||||||||| | || ||||||||||||| |||| | || | || Sbjct 187679 AGCGGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACA 187620 Query 181286 CTTCCTTATCGGCATTTATGCAT---ACATGGGACGTGAATGGGAACTCTCTTACCGCTT 181342 ||| | | || | || |||| | ||||| ||||| |||||||| || ||| | Sbjct 187619 CTTTTTACTTGG--TGTA-GCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCT 187563 Query 181343 AGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGCTGT 181402 |||||||||||| ||||| ||||||||| | |||| | ||||| || ||||||| Sbjct 187562 AGGTATGCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGT 187503 Query 181403 ATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTC 181462 ||| | |||| || | |||||||| || | ||| | ||||| || | ||||| Sbjct 187502 TTTCTTGATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTC 187443 Query 181463 TGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCCCTT 181522 |||||| ||||||| ||| |||| ||| | || ||||||||||| || |||||||| || Sbjct 187442 TGGTACTTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATT 187383 Query 181523 CCACATGTTGGGTGTCGCAGGTG--------TATTTGGTGGTTCACTGTTCAGTGCAATG 181574 |||||||| ||||| || |||| |||| || | || || | ||||| ||| Sbjct 187382 TCACATGTTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCTTTCTAGTGCTATG 187323 Query 181575 CACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAAC 181634 || ||||| ||||| | ||| | | | || || || |||| ||| || || Sbjct 187322 CATGGTTCCTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAAT 187263 Query 181635 TATGGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTAC 181694 | ||||||| ||||| ||||| ||||| || || || || || || || || ||||| Sbjct 187262 GAGGGTTACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTAT 187203 Query 181695 TTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTC 181754 || | || |||||||| |||||| || |||||| |||| ||||| | ||||||||| Sbjct 187202 TTCGCCCGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTC 187143 Query 181755 CTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCA 181814 | || || ||||||||||| || || ||||| | || | || | || || ||||| Sbjct 187142 TTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCC 187083 Query 181815 TTTAACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTC 181874 || ||| | ||||| ||||| |||||||| ||| | | || | ||||| ||||| | Sbjct 187082 TTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATT 187023 Query 181875 AACACCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGC 181934 || || ||||| || | | |||||||| || || |||||||| ||||| || || Sbjct 187022 AATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 186963 Query 181935 AACGCGCACAACTTCCCGCTTGATCTTGCAGC 181966 || || || |||||||| || || || || || Sbjct 186962 AATGCTCATAACTTCCCTCTAGACCTAGCCGC 186931 >seq2646 Length=128401 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 179466 TGAGGATGATCAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTC 179525 || ||||||| || ||||| || || |||||||| ||| || || | |||||| Sbjct 23996 TGCGGATGATACTTACATCCTCGATGCAGCTGAAGACAAAGGGGTTGACTTGCCTTACTC 24055 Query 179526 TTGTCGTGCTGGTGCTTGTTCATCTTGTGCTGGTAAATTAGAGAGTGGATCTGTTGATCA 179585 || | || ||||| || ||| | ||||||||| | | | |||||| | |||||||| Sbjct 24056 ATGCAGGGCAGGTGCCTGCTCAACCTGTGCTGGTCAGCTTGTAAGTGGAACAGTTGATCA 24115 Query 179586 AAGCGATCAATCGTTTTTGGATGACGATCAAATGGAGTCGGGATTTATTCTGACTTGCGT 179645 |||| ||| || | |||||| ||||||||||| || | | | || ||||| || Sbjct 24116 GTCCGATGGATCCTTCCTTGATGACAATCAAATGGAGAAAGGTTATTTGCTCACTTGTGT 24175 Query 179646 ATCTTATCC 179654 ||||| || Sbjct 24176 TTCTTACCC 24184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614594451964640