Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq1325 439 4e-118 seq2002 430 2e-115 seq1658 416 4e-111 >seq1325 Length=385796 Score = 439 bits (486), Expect = 4e-118 Identities = 670/948 (71%), Gaps = 5/948 (1%) Strand=Plus/Plus Query 174499 GTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACTGTAT 174558 ||||||| | || ||||| |||||| | ||||| || || || || | |||||| | | Sbjct 7016 GTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCAACCTTATTGACTGCAACT-TCT 7074 Query 174559 GT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCA 174617 || || ||| | || ||| | | |||||| | ||| || || || || || ||||||| Sbjct 7075 GTATTTATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGTATTCGTGAACTT 7134 Query 174618 GTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCA 174677 || | || || || | || |||||||| || || || ||||| || |||||| ||| Sbjct 7135 GTTTCCGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGCCATTATTCCTACTTCT 7194 Query 174678 AACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTC 174737 || || || | ||||| || ||||| ||||||||||| | | || || ||| | Sbjct 7195 GCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTTGATGAGTGGTTA 7254 Query 174738 TACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTAT 174797 |||||||| ||||||| ||||| |||| | |||| | ||||| | ||| Sbjct 7255 TACAACGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGGTGTAGCATGTTAT 7314 Query 174798 ATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCA 174857 ||||| |||||||||||||| || ||| | |||||| | |||||||| ||| ||| Sbjct 7315 ATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGATGTTGCA 7374 Query 174858 TACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGT 174917 || || || || |||||||| ||| | | || ||| | |||| | | |||||||| Sbjct 7375 TATTCAGCTCCGGTTGCAGCGGCTACTGTTGTTTTCTTGATCTACCTAATTGGTCAAGGA 7434 Query 174918 TCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTC 174977 || || || | ||||| | || |||||| | || ||||||| ||| | || ||| Sbjct 7435 AGCTTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTC 7494 Query 174978 CAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTC 175037 || || || || |||||| | ||||| || || | |||||| || || || ||||| ||| Sbjct 7495 CAGGCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAGCTGGTGTGTTC 7554 Query 175038 GGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTG-TCCGTGA 175096 | || || | | || ||||||||||| |||| || || | ||| || | || Sbjct 7555 GAAGGCTCTCTTTATAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTTGATCAGGGA 7613 Query 175097 GACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTA 175156 || || ||| ||| || || | ||||||| ||| | ||||| ||||| || || Sbjct 7614 AACCACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAGAGGAAGAAACTTA 7673 Query 175157 TAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAA 175216 ||| || || || || ||||| || ||||| || |||||||| ||||| ||| ||||| Sbjct 7674 TAATATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCAATATGCTAGTTTCAA 7733 Query 175217 CAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCAC 175276 |||||| || || | | |||||||||||| || ||||| || || ||||| ||||| || Sbjct 7734 CAACTCTCGTTCTTTAC-CTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTAC 7792 Query 175277 CGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGT 175336 || | ||| || || ||||| |||||| | ||||||||||| |||||||| ||||| Sbjct 7793 TGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATTTCAACCAATCTGT 7852 Query 175337 TATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCT 175396 | || | |||||| | ||| | | || ||||| ||| | ||||| ||| | Sbjct 7853 AGTTGATAGTCAAGGTCGTGTAATTCATACTTGGGCTGATATCATTAACCATGCTAACTT 7912 Query 175397 TGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGA 175444 ||| |||||||| |||||||| | ||||| || |||||||| | ||| Sbjct 7913 TGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCAAGA 7960 >seq2002 Length=1023113 Score = 430 bits (476), Expect = 2e-115 Identities = 701/1008 (70%), Gaps = 1/1008 (0%) Strand=Plus/Plus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 ||||| | |||| |||||| | | || || | || | ||| | || |||||||| | Sbjct 167430 TGATAGTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGGCT 167489 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972 | | || ||| | ||||||| | ||| | || || ||| |||| || ||||| ||||| Sbjct 167490 ATTGCT-CTTTCGTGTGCTTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGT 167548 Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCAC 176032 || ||||| |||||||| | || ||| ||| | || ||| || || | || Sbjct 167549 AACTTCATGGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGTTGCAATTTCTTAAC 167608 Query 176033 AGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCC 176092 ||| | || || ||||||||| || | | | || ||| | | |||| |||||||| Sbjct 167609 CGCGACAGTTTCTACTCCTGCTAATAGTTTAGCCCACTCTTTATTGTTACTGTGGGGTCC 167668 Query 176093 TGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGC 176152 ||| | || || ||||| || ||| ||| | || || || ||| | |||||||| Sbjct 167669 CGAAGCACAAGGAGACTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGC 167728 Query 176153 TCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACT 176212 ||| || ||||| ||||| || || || || ||| | ||||| || || || || || Sbjct 167729 TCTTCATGGTGCTTTCGCACTTATAGGTTTTATGTTACGTCAATTCGAGCTTGCTCGATC 167788 Query 176213 CATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAG 176272 | || | || || || || || || ||||| |||||| || ||||| ||||| Sbjct 167789 CGTTCAATTGCGCCCTTATAATGCAATCGCATTATCTGGTCCAATTGCTGTTTTTGTTTC 167848 Query 176273 TGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGT 176332 ||| || || | || ||||||||||| ||| ||||||||||| || |||||| | Sbjct 167849 TGTATTCCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTAT 167908 Query 176333 GGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCC 176392 ||||| || ||| ||||| | | ||| |||| || || || || ||||||||||| || Sbjct 167909 AGCAGCTATATTTCGATTCATTCTCTTTTTTCAAGGGTTTCATAATTGGACACTGAATCC 167968 Query 176393 CTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGG 176452 || ||||||||||||||||| ||| || | || | || ||||||| || || ||||| Sbjct 167969 ATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCCGCTCTACTATGCGCTATTCATGG 168028 Query 176453 CGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTT 176512 || ||| || ||||||| ||| |||||| || || | || || ||| || || Sbjct 168029 CGCTACCGTAGAAAATAATTTATTTGAAGACGGTGATGGGGCAAATACATTCCGGGCTTT 168088 Query 176513 CGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCA 176572 | | || || | ||||| || ||||| ||||| || || |||||||| ||||| || Sbjct 168089 TAACCCAACCCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCA 168148 Query 176573 AATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCC 176632 ||| || || ||||| ||| ||||| ||||| | || ||||||||||| ||||| || Sbjct 168149 AATTTTTGGCGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACC 168208 Query 176633 TGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGC 176692 || | ||| | ||| | | |||| | | || | ||| | || || ||||| Sbjct 168209 AGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTATGGCTTTGAACCTACGTGC 168268 Query 176693 TTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTA 176752 ||||| || | ||| || || | ||||| ||||||||||| |||||||||||||| Sbjct 168269 CTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTA 168328 Query 176753 CACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAACC 176812 ||| || || || || | |||||||| | | || |||||||| || ||||| || Sbjct 168329 CACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCC 168388 Query 176813 ACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 ||||| || ||||||| || || |||||||| | || ||||| Sbjct 168389 TCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGC 168436 >seq1658 Length=355568 Score = 416 bits (460), Expect = 4e-111 Identities = 673/961 (70%), Gaps = 14/961 (1%) Strand=Plus/Minus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554 || |||||||| | || ||||| |||||| | ||||| ||||| || || | |||||| Sbjct 187897 AACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACT 187838 Query 174555 GTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGA 174613 | ||| || ||||| || ||| | | |||||| | | | || || || || || ||||| Sbjct 187837 -TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGATATTGATGGTATTCGTGA 187779 Query 174614 ACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAG 174673 ||| || | || || || | || ||||| || || || || ||| | || |||||| Sbjct 187778 ACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTCGGGTACCATTATTCCTAC 187719 Query 174674 TTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATG 174733 || | | || | ||||| || ||||| || ||||| || | || || || Sbjct 187718 TTTTGCAGTTGTAGGGTTGCACTTTTATCCAATATGAGAAGCGGCGTTGGTTGATGAGTG 187659 Query 174734 GCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGC 174793 | | |||||||||||||||| ||||| |||| | ||||| | ||||| | Sbjct 187658 GTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCATG 187599 Query 174794 CTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGT 174853 |||||||| |||||||||||||| || ||| |||||||| | |||||||| ||| Sbjct 187598 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGTTGT 187539 Query 174854 AGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCA 174913 ||||| | || | ||||||| ||| | || || ||| | |||| || | ||||| Sbjct 187538 TGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCA 187479 Query 174914 AGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGT 174973 ||| ||| | || | ||||| | | |||||||| || ||||||| ||| | || Sbjct 187478 AGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTTATGATTGT 187419 Query 174974 CTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGT 175033 ||| | || || || |||||| | ||||| || || |||||||| || || || |||| Sbjct 187418 ATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGA 187359 Query 175034 C--------TTCGGTGGTTCATTGTTCTCA-GCGATGCATGGTTCACTTGTTACCTCTTC 175084 | ||||| | || | |||| || ||||||||||| |||| || | | Sbjct 187358 CCTGGTGTATTCGGCCGCTCTCT-TTCTAGTGCTATGCATGGTTC-CTTGGTAATTTCTA 187301 Query 175085 ACTTG-TCCGTGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAG 175143 ||| | | || || || |||| ||| || || | ||||||| ||||| |||| Sbjct 187300 GTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAGGGTTACAGATTCGGGCAAG 187241 Query 175144 AAGAAGAGACCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAAT 175203 | ||||| || ||||| || || || || ||||| || |||| || |||||||| |||| Sbjct 187240 AGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGCCCGATTGATCTTTCAAT 187181 Query 175204 ACGCTTCATTCAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGG 175263 | || |||||| |||| || || | |||||||||||||| || ||||| || || | Sbjct 187180 ATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAG 187121 Query 175264 GTATCTGGTTCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACT 175323 |||| ||||| | || | ||| || || ||||| |||||| | ||||||||||| | Sbjct 187120 GTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATT 187061 Query 175324 TCAACCAGTCTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTA 175383 ||||||| ||||| | || | |||||| | ||| | || || ||||| ||| | ||| Sbjct 187060 TCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATCATTA 187001 Query 175384 ACAGAGCTGGTCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAG 175443 || | ||| ||||| |||||||| |||||||| | ||||| || |||||||| |||| Sbjct 187000 ACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAG 186941 Query 175444 A 175444 | Sbjct 186940 A 186940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729902109026440