Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq1325 455 4e-123 seq1658 435 4e-117 seq2002 419 3e-112 >seq1325 Length=385796 Score = 455 bits (504), Expect = 4e-123 Identities = 676/952 (71%), Gaps = 5/952 (1%) Strand=Plus/Plus Query 177870 ACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCA 177929 || || ||| | || ||| | || ||||| || || ||||||| ||||| | ||| | Sbjct 7006 ACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCAACCTTATTGACT 7065 Query 177930 GCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCAT 177988 |||||| ||||| || || | |||||| | |||||||| | || || || || || || Sbjct 7066 GCAACT-TCTGTATTTATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGTAT 7124 Query 177989 CCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGT 178048 ||||||| || | || || || | || || ||||| || || || ||||| || | Sbjct 7125 TCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGCCATTAT 7184 Query 178049 TCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGA 178108 ||| |||| || || || | ||||| ||||| || |||||||| || || |||| Sbjct 7185 TCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTTGA 7244 Query 178109 TGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTAT 178168 ||||||| | || ||||| ||||||| |||| | || | |||| | ||||| | Sbjct 7245 TGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGGTGT 7304 Query 178169 CT-ATGCATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGA 178227 ||| || ||||| ||||||||||||||| | |||| | ||||||||||| |||| Sbjct 7305 AGCATGT-TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGA 7363 Query 178228 TCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTT 178287 | ||| ||||| || ||||| || ||||| || | | || ||| || |||| | Sbjct 7364 TTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGTTGTTTTCTTGATCTACCTAA 7423 Query 178288 TCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACA 178347 | |||||||| |||||||| | ||||| || || |||||| |||| ||||||| | Sbjct 7424 TTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTA 7483 Query 178348 TGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCG 178407 || |||| ||||| || || |||||||| || ||||| || || | |||||| ||||| | Sbjct 7484 TGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAG 7543 Query 178408 CAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCAC 178467 | ||||| |||| || || || | ||||| ||||| ||||| ||||| || ||| Sbjct 7544 CTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTT 7603 Query 178468 TCGTTCGTGAAACGACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAG 178527 | | | ||||| || ||| ||||| || | ||||| | ||| | ||||| | Sbjct 7604 TGATCAGGGAAACCACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAGAGG 7663 Query 178528 AAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATG 178587 |||| || || || || || || || ||||| || ||||| || |||||||| ||||||| Sbjct 7664 AAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCAATATG 7723 Query 178588 CTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAA 178647 || ||||||||||| ||||| | | ||||||| | || || ||||||||||| || | Sbjct 7724 CTAGTTTCAACAACTCTCGTTCTTTAC-CTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTA 7782 Query 178648 TCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCA 178707 | ||||| || || | || | || || ||||| || ||| | ||||| ||||| |||| Sbjct 7783 TTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATTTCA 7842 Query 178708 ACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACC 178767 |||| || | | || | ||||| ||||| | | || ||||| || | | |||| Sbjct 7843 ACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACTTGGGCTGATATCATTAACC 7902 Query 178768 GTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCC 178819 ||| | || |||||||| ||||| || || || || || |||||||| Sbjct 7903 ATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCC 7954 >seq1658 Length=355568 Score = 435 bits (482), Expect = 4e-117 Identities = 694/990 (70%), Gaps = 18/990 (2%) Strand=Plus/Minus Query 177858 TGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCA 177917 ||| ||||| || | ||||| || ||| | || ||||| || || ||||||| || Sbjct 187915 TGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCT 187856 Query 177918 ACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGA 177976 || | ||| | |||||| ||||| || || | |||||| | |||||||| | | || Sbjct 187855 ACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGA 187797 Query 177977 CATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTC 178036 || || || || |||||||| || | || || || | || || || || || || || Sbjct 187796 TATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTC 187737 Query 178037 TGGTGCAGTTGTTCCATCTTCCAACGCAATTG---GTCTTCACTTCTATCCCATCTGGGA 178093 ||| | || |||| ||| ||| ||| | | ||||| ||||| || || || Sbjct 187736 GGGTACCATTATTCCTACTTTT---GCAGTTGTAGGGTTGCACTTTTATCCAATATGAGA 187680 Query 178094 AGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCA 178153 ||| || | ||||||||||| | || ||||||||||||| |||| | || | || Sbjct 187679 AGCGGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACA 187620 Query 178154 CTTCCTCATTGGTATCT-ATGCATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAG 178212 ||| | ||||| | ||| || ||||| ||||||||||||||| | |||| ||| Sbjct 187619 CTTTTTACTTGGTGTAGCATGT-TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAG 187561 Query 178213 GTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTAT 178272 |||||||||| ||||| ||| ||||| | |||| | ||||| || | || || | Sbjct 187560 GTATGCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTT 187501 Query 178273 TCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTG 178332 || || |||| || | |||||||| ||||| ||| | ||||| || | ||||||| Sbjct 187500 TCTTGATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTG 187441 Query 178333 GTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCC 178392 |||| ||||||| ||| |||| ||| | || || |||||||| || ||||| || || | Sbjct 187440 GTACTTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTC 187381 Query 178393 ACATGTTGGGTGTCGCAGGTG--------TATTCGGTGGTTCACTGTTCAGTGCAATGCA 178444 ||||||| ||||| || |||| ||||||| | || || | ||||| ||||| Sbjct 187380 ACATGTTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCTTTCTAGTGCTATGCA 187321 Query 178445 CGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTA 178504 ||||| ||||| | ||| | || | ||||| || |||| ||||| || | Sbjct 187320 TGGTTCCTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGA 187261 Query 178505 TGGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTT 178564 ||||| | ||||| ||||| ||||| || || || || || || || ||||| || || Sbjct 187260 GGGTTACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTT 187201 Query 178565 CGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCT 178624 || || |||||||| |||||| || |||||| |||| ||||| | ||||||||| | Sbjct 187200 CGCCCGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTT 187141 Query 178625 CGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATT 178684 || || ||||||||||| || || ||||| | || | || | || || ||||| || Sbjct 187140 AGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTT 187081 Query 178685 TAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAA 178744 ||| | ||||| ||||| |||||||| || | | || | ||||| ||||| | || Sbjct 187080 CAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAA 187021 Query 178745 CACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAA 178804 || ||||| || | | |||||||| || || |||||||| ||||| || || || Sbjct 187020 TACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 186961 Query 178805 CGCGCACAACTTCCCGCTTGATCTTGCAGC 178834 || || |||||||| || || || || || Sbjct 186960 TGCTCATAACTTCCCTCTAGACCTAGCCGC 186931 >seq2002 Length=1023113 Score = 419 bits (464), Expect = 3e-112 Identities = 691/990 (70%), Gaps = 5/990 (1%) Strand=Plus/Plus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 |||| |||||| | |||| || || || ||||| ||||||||||| || | || | Sbjct 167438 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGGCTATTGCT-C 167496 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 || | ||||||| | ||| | || |||||| |||| || ||| | ||||| || | Sbjct 167497 TTTCGTGTGCTTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 167556 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTTA-CGGCAGCT 179411 |||| ||||| || | || ||||| ||| | || ||| || ||||||| | || | Sbjct 167557 GGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGTTGCAA-TTTCTTAACCGCGACA 167615 Query 179412 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 179471 || || || |||||| || | | | || ||| | | |||| |||||||| || | Sbjct 167616 GTTTCTACTCCTGCTAATAGTTTAGCCCACTCTTTATTGTTACTGTGGGGTCCCGAAGCA 167675 Query 179472 CAGGG-GAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCA 179530 || || || ||| | || ||||| ||| | || || || |||| ||| || ||||| || Sbjct 167676 CAAGGAGACTTTACT-CGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCA 167734 Query 179531 CGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGCCTGATTGG 179590 ||||| ||||| || || ||||| ||| | | ||||| || |||||||| || Sbjct 167735 TGGTGCTTTCGCACTTATAGGTTTTATGTTACGTCAATTCGAGCTTGCTCGATCCGTTCA 167794 Query 179591 TATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTT 179650 | | ||||| ||||| || || || |||||||| |||||||| || || ||| || Sbjct 167795 ATTGCGCCCTTATAATGCAATCGCATTATCTGGTCCAATTGCTGTTTTTGTTTCTGTATT 167854 Query 179651 CCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGC 179710 ||| || ||||| | || ||||| |||||| || || || |||||| | || || Sbjct 167855 CCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTATAGCAGC 167914 Query 179711 GATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCA 179770 || || | ||| | || || |||| || || || || ||||| || || || || || Sbjct 167915 TATATTTCGATTCATTCTCTTTTTTCAAGGGTTTCATAATTGGACACTGAATCCATTTCA 167974 Query 179771 TATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTAC 179830 ||||||||||||||| ||| || | || | || || || | ||||| ||||| | ||| Sbjct 167975 TATGATGGGAGTTGCCGGTGTATTGGGCGCCGCTCTACTATGCGCTATTCATGGCGCTAC 168034 Query 179831 TGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTC 179890 ||||| |||| || | |||||| || || |||||||| || ||| ||| | | Sbjct 168035 CGTAGAAAATAATTTATTTGAAGACGGTGATGGGGCAAATACATTCCGGGCTTTTAACCC 168094 Query 179891 GACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 179950 || || | ||||| |||||||| |||||||| || |||||||| ||||| || || || Sbjct 168095 AACCCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTT 168154 Query 179951 CGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTAT 180010 || |||| ||||| || || | ||| | ||||| || ||||| ||||| || || | Sbjct 168155 TGGCGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 168214 Query 180011 GGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGA 180070 ||| |||||| || |||| | | ||| | ||| | ||||| ||||| || || Sbjct 168215 CGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATGA 168274 Query 180071 TTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAA 180130 ||| | ||||| ||| | ||||| |||||||| || ||||| || ||||||||||| Sbjct 168275 CTTCATTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAA 168334 Query 180131 GAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATGA 180190 || ||||| | || ||||| | ||||| ||| |||| | ||||| || ||||| Sbjct 168335 AAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 168394 Query 180191 GTCATTCGTATTCCCAGAAGAAGTTCTGCC 180220 | ||||||| || || ||||| || Sbjct 168395 AAACCTTATATTCCCTGAGGAGGTTCTACC 168424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605986776163440