Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq1325 489 2e-133 seq2002 466 2e-126 seq1658 466 2e-126 >seq1325 Length=385796 Score = 489 bits (542), Expect = 2e-133 Identities = 697/971 (72%), Gaps = 11/971 (1%) Strand=Plus/Plus Query 158400 ACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCA 158459 || || ||| | || ||| | || ||||| || || ||||||| ||||| | ||| | Sbjct 7006 ACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCAACCTTATTGACT 7065 Query 158460 GCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCAT 158518 ||||| ||||| || || | |||||| | |||||||| | || || || || || || Sbjct 7066 GCAACT-TCTGTATTTATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGTAT 7124 Query 158519 CCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGT 158578 ||||||| || | || || || | || || ||||| || || || ||||| || | Sbjct 7125 TCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGCCATTAT 7184 Query 158579 ACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGA 158638 || |||| || || || | ||||| ||||| || |||||||| || || |||| Sbjct 7185 TCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTTGA 7244 Query 158639 TGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCAT 158698 ||||||| | || ||||| ||||||| |||| | || | |||| | | || | Sbjct 7245 TGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGG--T 7302 Query 158699 CTATGCAT---ATATGGGACGTGAATGGGAACTTTCATACCGCTTAGGTATGCGCCCCTG 158755 || |||| ||||||| ||||| ||||||||| | ||| | ||||||||||| || Sbjct 7303 GTA-GCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTG 7361 Query 158756 GATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCC 158815 ||| ||| |||||||| || || || || || || ||| ||| ||| | |||| | Sbjct 7362 GATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGTTGTTTTCTTGATCTACCT 7421 Query 158816 TTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTA 158875 | |||||||| || || |||| ||||||||| || |||||| ||||||| |||| Sbjct 7422 AATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTT 7481 Query 158876 CATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGT 158935 ||| |||||||||| || || ||||||||||||||||| || || | ||| | ||||| Sbjct 7482 TATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGT 7541 Query 158936 TGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTC 158995 ||||| || |||| || ||||||| |||||||||||| | || |||| || Sbjct 7542 AGCTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCATGGTTCCTTGGTAACTT-CTA 7600 Query 158996 ACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGACAAG 159054 | | || | ||||| || ||| || || || | ||||||| ||| | |||| Sbjct 7601 GTTTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAG 7660 Query 159055 AAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAAT 159114 | |||||||| |||||||| || || || |||||||| ||||| || |||||||| |||| Sbjct 7661 AGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCAAT 7720 Query 159115 ACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCG 159174 | ||| ||||||||||| ||||| || | ||||||| | ||||| |||||||| || | Sbjct 7721 ATGCTAGTTTCAACAACTCTCGTTCTTTAC-CTTCTTCTTAGCTGCTTGGCCTGTAGTAG 7779 Query 159175 GCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACT 159234 | || ||||| || || | || | || ||||| |||||| | || |||||||| | Sbjct 7780 GTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATT 7839 Query 159235 TCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGA 159294 ||||||| || | ||||| |||| |||||||| | | || ||||| ||| | | | Sbjct 7840 TCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACTTGGGCTGATATCATTA 7899 Query 159295 ACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCG 159354 ||| ||| | |||||||||||||||||||| ||||| || || |||||||| | | Sbjct 7900 ACCATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCAAG 7959 Query 159355 ACCTTGCTGCT 159365 |||| || ||| Sbjct 7960 ACCTAGCCGCT 7970 >seq2002 Length=1023113 Score = 466 bits (516), Expect = 2e-126 Identities = 708/995 (71%), Gaps = 11/995 (1%) Strand=Plus/Plus Query 159927 GGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTG 159986 |||| |||||||||||||| || |||||||| || | || ||| | ||||||| | | Sbjct 167456 GGGACCGTTTCGTTTTTGTAGGTTGGTCTGGGCTATTGCT-CTTTCGTGTGCTTATTTCG 167514 Query 159987 CTATTGGCGGTTGGCTTACTGGAACAACTTTCGCAACGAGCTGGTATACCCATGGACTCG 160046 | | || |||||| |||| || ||||| || | ||| ||||||||||||||| | | Sbjct 167515 CCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTGG 167574 Query 160047 CTAGTTCCTATCTTGAGGGT-GCAAACTTTCTTA-CAGCGTCAGTTAGCACTCCAGCTGA 160104 | ||||| ||| | || ||| |||| ||||||| | ||| ||||| ||||| ||| | Sbjct 167575 CCAGTTCTTATTTGGAAGGTTGCAA--TTTCTTAACCGCGACAGTTTCTACTCCTGCTAA 167632 Query 160105 CGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGA-TTTCGTC 160162 | | | || ||| || || || || |||||||| || || ||||| || ||| || Sbjct 167633 TAGTTTAGCCCACTCT-TTATTGTTACTGTGGGGTCCCGAAGCACAAGGAGACTTTACTC 167691 Query 160163 AGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTA 160222 | ||| ||| | || || || |||| |||||| || || |||||||| ||||| || Sbjct 167692 -GTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCATGGTGCTTTCGCACTT 167750 Query 160223 ATTGGATTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAA 160281 || || || ||| | ||||| || || || || || || || | | || ||||| || Sbjct 167751 ATAGGTTTTATGTTACGTCAATTCGAGCTTGCTCGATCCGTTCAAT-TGCGCCCTTATAA 167809 Query 160282 TGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCATCTACCCATT 160341 ||| || || || |||||||| |||||||| ||||| |||||||| || || ||| | Sbjct 167810 TGCAATCGCATTATCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTAATTTATCCACT 167869 Query 160342 GGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCT 160401 |||||||| ||||||| || || || ||||| | ||||| || ||| ||||| | Sbjct 167870 AGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTATAGCAGCTATATTTCGATTCAT 167929 Query 160402 GTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGTTGC 160461 | || ||||||| ||||| || ||||| || || || || ||||||||||||||||| Sbjct 167930 TCTCTTTTTTCAAGGGTTTCATAATTGGACACTGAATCCATTTCATATGATGGGAGTTGC 167989 Query 160462 TGGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACT 160521 ||| || | || | || || || | || || ||||||| ||| ||||| || | | Sbjct 167990 CGGTGTATTGGGCGCCGCTCTACTATGCGCTATTCATGGCGCTACCGTAGAAAATAATTT 168049 Query 160522 GTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGA 160581 | |||||| || || |||||||| || ||| ||| | | || || | ||||| Sbjct 168050 ATTTGAAGACGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAACCCAAGCCGAAGA 168109 Query 160582 GACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTC 160641 |||||||| |||||||| || |||||||| ||||| || || || || |||| ||||| Sbjct 168110 AACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTTTGGCGTTGCTTTTTC 168169 Query 160642 TAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATC 160701 || || | ||| | ||||| || ||||| ||||| || || | ||| | |||| Sbjct 168170 CAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAG 168229 Query 160702 CAGTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGA 160761 | |||| | | ||| | ||| | || || ||||| || || ||| | || || Sbjct 168230 TGCTCTTGGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATGACTTCATTTCCCAGGA 168289 Query 160762 GATTAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTACTGAA 160821 || | ||||| |||||||| |||||||| || ||||||||||| || || || | || Sbjct 168290 AATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAA 168349 Query 160822 TGAAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCC 160881 ||||| | ||||| ||| | || || || || || ||||| ||| |||| ||||| Sbjct 168350 CGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCC 168409 Query 160882 AGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 160916 || || ||||| || | || ||||| ||||||| Sbjct 168410 TGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAAT 168444 >seq1658 Length=355568 Score = 466 bits (516), Expect = 2e-126 Identities = 705/994 (71%), Gaps = 24/994 (2%) Strand=Plus/Minus Query 158388 TGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCA 158447 ||| ||||| || | ||||| || ||| | || ||||| || || ||||||| || Sbjct 187915 TGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCT 187856 Query 158448 ACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGA 158506 || | ||| | ||||| ||||| || || | |||||| | |||||||| | | || Sbjct 187855 ACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGA 187797 Query 158507 CATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTC 158566 || || || || |||||||| || | || || || | || || || || || || || Sbjct 187796 TATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTC 187737 Query 158567 TGGTGCAGTTGTACCATCTTCCAACGCAATTG---GTCTTCACTTCTATCCCATCTGGGA 158623 ||| | || | || ||| ||| ||| | | ||||| ||||| || || || Sbjct 187736 GGGTACCATTATTCCTACTTTT---GCAGTTGTAGGGTTGCACTTTTATCCAATATGAGA 187680 Query 158624 AGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCA 158683 ||| || | ||||||||||| | || ||||||||||||| |||| | || | || Sbjct 187679 AGCGGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACA 187620 Query 158684 CTTCCTTATCGGCATCTATGCAT---ATATGGGACGTGAATGGGAACTTTCATACCGCTT 158740 ||| | | || | || |||| ||||||| ||||| ||||||||| | ||| | Sbjct 187619 CTTTTTACTTGG--TGTA-GCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCT 187563 Query 158741 AGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGCTGT 158800 |||||||||||| ||||| ||| ||||||| || | | || || || ||||||| Sbjct 187562 AGGTATGCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGT 187503 Query 158801 ATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTC 158860 ||| | |||| || | |||||||| || | |||| ||||||||| | ||||| Sbjct 187502 TTTCTTGATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTC 187443 Query 158861 TGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTT 158920 ||||||||| |||| ||| |||||||| | || || ||||||||||||||||| || || Sbjct 187442 TGGTACTTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATT 187383 Query 158921 CCATATGCTCGGTGTTGCTGGGG--------TATTCGGTGGATCTCTTTTCTCTGCTATG 158972 || ||| | ||||| ||||| | ||||||| | ||||||| ||||||| Sbjct 187382 TCACATGTTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCTTTCTAGTGCTATG 187323 Query 158973 CATGGAAGTCTCGTTACTTCCTCACTCG-TTCGTGAAACGACTGAAACAGAGTCACAGAA 159031 ||||| || | || || || | | || | ||||| || |||| || || || Sbjct 187322 CATGGTTC-CTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAA 187264 Query 159032 CTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTA 159091 | ||||||| ||||| ||||| |||||||| |||||||| || || || |||||||| Sbjct 187263 TGAGGGTTACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTA 187204 Query 159092 CTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTT 159151 |||| || |||||||| ||||| || |||||| |||| ||||| || |||||||| Sbjct 187203 TTTCGCCCGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTT 187144 Query 159152 CCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGC 159211 | | ||||| |||||||| || || || ||||| | || | || | || ||||| Sbjct 187143 CTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGC 187084 Query 159212 ATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTT 159271 |||||| | || |||||||| |||||||| || | ||||| |||| |||||||| | Sbjct 187083 CTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAAT 187024 Query 159272 GAACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCG 159331 || || ||||| ||| | | |||||||| || |||||||||||||||||||| || Sbjct 187023 TAATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACG 186964 Query 159332 TAACGCACACAACTTCCCACTCGACCTTGCTGCT 159365 ||| || || |||||||| || ||||| || ||| Sbjct 186963 TAATGCTCATAACTTCCCTCTAGACCTAGCCGCT 186930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552452792463040