Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq1325 489 2e-133 seq2002 468 6e-127 seq1658 459 3e-124 seq2646 122 1e-22 >seq1325 Length=385796 Score = 489 bits (542), Expect = 2e-133 Identities = 696/970 (72%), Gaps = 7/970 (1%) Strand=Plus/Plus Query 178881 CACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTGATGATTCCTACGTTGCTTGC 178940 ||| || || || | ||| |||| ||||| ||||| ||||||| || || || | | Sbjct 7005 CACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCAACCTTATTGAC 7064 Query 178941 TGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCCGTCGATATTGACGGCA 178999 ||||||| ||||| || || | || ||| | || || |||| || |||||||| || | Sbjct 7065 TGCAACT-TCTGTATTTATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGTA 7123 Query 179000 TCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTG 179059 | ||||||| || | || || || | || |||||||| || || || ||||| || Sbjct 7124 TTCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGCCATTA 7183 Query 179060 TCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCATCTGGGAAGCAGCATCACTCG 179119 | || | ||| || || || | ||||| || || || ||||||||||| || | | Sbjct 7184 TTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTTG 7243 Query 179120 ATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTTATCGGCA 179179 |||||||| | || ||||| ||||||| |||| | || | |||| | | || Sbjct 7244 ATGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGGTG 7303 Query 179180 TCT-ATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGG 179238 | ||| |||||||| ||||||||||||||| || |||||| |||||||| || ||| Sbjct 7304 TAGCATGT-TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGG 7362 Query 179239 ATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCT 179298 || ||||||||| || || || || || || || | || || ||| | |||| | Sbjct 7363 ATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGTTGTTTTCTTGATCTACCTA 7422 Query 179299 TTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTAC 179358 | |||||||| || ||||||| ||||||||| || |||||| ||||||| |||| Sbjct 7423 ATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTT 7482 Query 179359 ATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTT 179418 ||| |||||||||| || || ||||||||||||||||| || || | ||| | ||||| Sbjct 7483 ATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTA 7542 Query 179419 GCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCG 179478 ||||| || |||| || ||||||| ||||||||| || | || |||| || | Sbjct 7543 GCTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCATGGTTCCTTGGTAACTT-CTAG 7601 Query 179479 CTTGTTC-GTGAAACAACTGAGACAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGA 179537 ||| || | ||||| || | | || || || | ||||| | ||| | ||||| Sbjct 7602 TTTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAGA 7661 Query 179538 AGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATA 179597 ||||| || ||||| || || || || ||||| || ||||| || |||||||| ||||| Sbjct 7662 GGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCAATA 7721 Query 179598 TGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGG 179657 ||| || |||||||| || ||||| | ||||||| | ||||| ||||| || || || Sbjct 7722 TGCTAGTTTCAACAACTCTCGTTCTTTAC-CTTCTTCTTAGCTGCTTGGCCTGTAGTAGG 7780 Query 179658 CATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCAACCTCAACGGTTTCAACTT 179717 || ||||| |||||| | || | || ||||| |||||| | || |||||||| || Sbjct 7781 TATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATTT 7840 Query 179718 CAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACACATGGGCGGACGTATTGAA 179777 |||||| || | |||| ||||||| ||||| || | || ||||| || | | || Sbjct 7841 CAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACTTGGGCTGATATCATTAA 7900 Query 179778 CCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGA 179837 || ||| || |||||||||||||||||||| ||||| || || |||||||| | || Sbjct 7901 CCATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCAAGA 7960 Query 179838 CCTTGCTGCT 179847 ||| || ||| Sbjct 7961 CCTAGCCGCT 7970 >seq2002 Length=1023113 Score = 468 bits (518), Expect = 6e-127 Identities = 697/982 (71%), Gaps = 5/982 (1%) Strand=Plus/Plus Query 180051 GACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTTGCC 180110 ||||| || || ||||| || |||||||| ||| | || ||| | ||||||| | ||| Sbjct 167458 GACCGTTTCGTTTTTGTAGGTTGGTCTGGGCTATTGCT-CTTTCGTGTGCTTATTTCGCC 167516 Query 180111 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCACGGTCTTGCT 180170 | || |||||| |||| || ||| | ||||| || ||||| ||||| || | || Sbjct 167517 TTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTGGCC 167576 Query 180171 TCTTCCTATCTTGAAGGTGCTAACTTTCTTA-CGGCAGCTGTCTCGACGCCTGCTGACGC 180229 ||| ||| | |||||| || ||||||| | || | || || || |||||| | Sbjct 167577 AGTTCTTATTTGGAAGGTTGCAA-TTTCTTAACCGCGACAGTTTCTACTCCTGCTAATAG 167635 Query 180230 TATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGG-GAATTTCCAACGGT 180288 | | | || ||| | | |||| |||||||| || | || || || ||| | || | Sbjct 167636 TTTAGCCCACTCTTTATTGTTACTGTGGGGTCCCGAAGCACAAGGAGACTTTACT-CGTT 167694 Query 180289 GGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTG 180348 |||| ||| | || || || |||| ||| || ||||| || ||||| ||||| || || | Sbjct 167695 GGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCATGGTGCTTTCGCACTTATAG 167754 Query 180349 GATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTA 180408 | |||||| |||| || || || || || || || | || ||||| ||||| | Sbjct 167755 GTTTTATGTTACGTCAATTCGAGCTTGCTCGATCCGTTCAATTGCGCCCTTATAATGCAA 167814 Query 180409 TTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTC 180468 | ||||| |||||||| || ||||| ||||| ||||| || || || ||||| |||| Sbjct 167815 TCGCATTATCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTAATTTATCCACTAGGTC 167874 Query 180469 AGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCT 180528 |||| ||||||||||||| || |||||| ||||||| || ||| ||||| | |||| Sbjct 167875 AGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTATAGCAGCTATATTTCGATTCATTCTCT 167934 Query 180529 TTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTA 180588 || |||| || || || || ||||| || || || || ||||||||||||||||| ||| Sbjct 167935 TTTTTCAAGGGTTTCATAATTGGACACTGAATCCATTTCATATGATGGGAGTTGCCGGTG 167994 Query 180589 TACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTATG 180648 || | || | || | |||| || || ||||||| || || || || | | | || Sbjct 167995 TATTGGGCGCCGCTCTACTATGCGCTATTCATGGCGCTACCGTAGAAAATAATTTATTTG 168054 Query 180649 AAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTT 180708 |||| || || ||||| || || ||| ||| | |||| |||| || ||||||| Sbjct 168055 AAGACGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAACCCAAGCCGAAGAAACTT 168114 Query 180709 ACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACA 180768 | || |||||||| || |||||||| ||||| || || || || |||| ||||| || | Sbjct 168115 ATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTTTGGCGTTGCTTTTTCCAATA 168174 Query 180769 AGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTA 180828 | | ||| | ||||| || ||||| ||||| || || | ||| |||||| || Sbjct 168175 AATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTC 168234 Query 180829 TTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCA 180888 |||| | | ||| | ||| | ||||| ||||| || || ||| | || || ||| Sbjct 168235 TTGGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATGACTTCATTTCCCAGGAAATCC 168294 Query 180889 GAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAG 180948 | ||||| ||||||||||| || || || ||||||||||| || || || || || |||| Sbjct 168295 GTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGAAG 168354 Query 180949 GACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAG 181008 | | ||||| ||| |||| || ||||| || || |||||| | || |||||||| | Sbjct 168355 GTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 168414 Query 181009 AAGTTCTACCAAGAGGTAACGC 181030 | |||||||| | || ||||| Sbjct 168415 AGGTTCTACCCCGTGGAAACGC 168436 >seq1658 Length=355568 Score = 459 bits (508), Expect = 3e-124 Identities = 702/992 (71%), Gaps = 20/992 (2%) Strand=Plus/Minus Query 178870 TGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTGATGATTCCT 178929 ||| |||| ||| | || ||| | ||| |||| ||||| ||||| ||||||| ||| Sbjct 187915 TGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCT 187856 Query 178930 ACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCCGTCGA 178988 || || | |||||||| ||||| || || | || ||| | || || |||| | || Sbjct 187855 ACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGA 187797 Query 178989 TATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTC 179048 |||||| || || |||||||| || | || || || | || ||||| || || || || Sbjct 187796 TATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTC 187737 Query 179049 TGGTGCTGTTGTCCCAAGTTCAAACGCAATTG---GTCTACACTTCTACCCCATCTGGGA 179105 ||| | || | || | || ||| ||| | | ||||| || || || || || Sbjct 187736 GGGTACCATTATTCCTACTTTT---GCAGTTGTAGGGTTGCACTTTTATCCAATATGAGA 187680 Query 179106 AGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGTCTTCCA 179165 ||| || | | ||||||||| | || ||||||||||||| |||| | || | || Sbjct 187679 AGCGGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACA 187620 Query 179166 CTTCCTTATCGGCATCT-ATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGTCTAG 179224 ||| | | || | ||| |||||||| ||||||||||||||| || |||||||| Sbjct 187619 CTTTTTACTTGGTGTAGCATGT-TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAG 187561 Query 179225 GTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTAT 179284 ||||||| || ||||| ||||||||| | || | | || || || | ||| || | Sbjct 187560 GTATGCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTT 187501 Query 179285 TCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTG 179344 || | |||| || | |||||||| || | ||||| ||||||||| | ||||||| Sbjct 187500 TCTTGATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTG 187441 Query 179345 GTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCC 179404 ||||||| |||| ||| |||||||| | || || ||||||||||||||||| || || | Sbjct 187440 GTACTTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTC 187381 Query 179405 ATATGCTCGGTGTTGCTGGGG--------TATTCGGTGGATCTCTTTTCTCTGCTATGCA 179456 | ||| | ||||| ||||| | ||||||| | ||||||| ||||||||| Sbjct 187380 ACATGTTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCTTTCTAGTGCTATGCA 187321 Query 179457 CGGAAGTCTCGTTACTTCCTCGCTTG-TTCGTGAAACAACTGAGACAGAGTCACAGAACT 179515 || || | || || || | ||| || | ||||| || || | || || || Sbjct 187320 TGGTTC-CTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATG 187262 Query 179516 ATGGTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACT 179575 | ||||| | ||||| ||||| ||||| || ||||| || || || || ||||| || | Sbjct 187261 AGGGTTACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATT 187202 Query 179576 TCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCC 179635 ||| || |||||||| |||||| | || ||| |||| || ||||| ||||||||| Sbjct 187201 TCGCCCGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCT 187142 Query 179636 TTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGT 179695 | ||||| ||||| || || || || ||||| | |||| | || | || ||||| | Sbjct 187141 TAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCT 187082 Query 179696 TCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTA 179755 ||||| | || |||||||| |||||||| || | |||| ||||||| ||||| ||| Sbjct 187081 TCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTA 187022 Query 179756 ACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTA 179815 | || ||||| || | | |||||||| | |||||||||||||||||||| |||| Sbjct 187021 ATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 186962 Query 179816 ACGCACACAACTTCCCACTCGACCTTGCTGCT 179847 | || || |||||||| || ||||| || ||| Sbjct 186961 ATGCTCATAACTTCCCTCTAGACCTAGCCGCT 186930 >seq2646 Length=128401 Score = 122 bits (134), Expect = 1e-22 Identities = 164/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 177390 TACATCCTCGACGCCGCTGAAGAAGCAGGTGTTGATATTAATTACTCATGCCGCGCTGGT 177449 ||||||||||| || |||||||| ||| ||||| | |||||||||| | || ||| Sbjct 24009 TACATCCTCGATGCAGCTGAAGACAAAGGGGTTGACTTGCCTTACTCATGCAGGGCAGGT 24068 Query 177450 GCTTGTTCATCCTGTGCTGGTAAACTTGAGAGTGGTAGTGTAGATCAAAGCGATCAATCG 177509 || || ||| ||||||||||| | |||| ||||| | || ||||| |||| ||| Sbjct 24069 GCCTGCTCAACCTGTGCTGGTCAGCTTGTAAGTGGAACAGTTGATCAGTCCGATGGATCC 24128 Query 177510 TTCTTGGATGACGATCAAATGGAGTCAGGATTTATTCTGACCTGTGTGTCATATCCCACC 177569 ||| | |||||| ||||||||||| ||| | | | || || ||||| || || ||| | Sbjct 24129 TTCCTTGATGACAATCAAATGGAGAAAGGTTATTTGCTCACTTGTGTTTCTTA-CCCGCG 24187 Query 177570 AGC-GATTGTGTAGTCTTGACCGATCAGGAAGAGAGTCTTTACTGA 177614 | | || |||||| || ||| | |||| | |||||||||| Sbjct 24188 ATCAGACTGTGTAATCCATACCCACAAGGAGGGTGATCTTTACTGA 24233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610306613461440