Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2659 212 9e-50 seq558 91.5 2e-13 >seq2659 Length=772501 Score = 212 bits (234), Expect = 9e-50 Identities = 523/783 (67%), Gaps = 23/783 (3%) Strand=Plus/Minus Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 || ||| ||||||||||| || ||||| |||||| ||||| ||||| || | || Sbjct 21130 CAGTCTGTCTGCAACAAACTCAATGTACTGACTCATCAGCTCACAGTTCATCCCAACCAG 21071 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 || || || || || || |||| |||||| ||||| || || || || | | ||| Sbjct 21070 CTTCACCGGAAGCGCATCAGTTACGAACTCTCGCTCGATATCGACTGCATCCTTCACTAT 21011 Query 39565 CGATGTTACTACCTCATCACTCGGTGGATGC---AATAAA-TGTTTAAACATTAAGCAGG 39620 | || ||| ||||| | | | | ||| ||| ||| | || | Sbjct 21010 CCCCTGAACCTTCTCCACACTCAGCTTCTTCTTCAGTAAGCTGT----ACAACAGACAAG 20955 Query 39621 CGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAG 39680 | ||||||||||| || || || |||| || | ||||| || || || | || | Sbjct 20954 CAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAACCCG 20895 Query 39681 GCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAA-AAGAAGATG 39739 |||||| ||||||||||| ||||| || |||| ||||||| ||| | | ||||| || Sbjct 20894 GCATTAACCCACGCTTTTTAAGCCAGAAGATGG-AGCAAAAACTCCCGGAGAAGAAAATC 20836 Query 39740 CCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACT-TGTATCATTATGTATC 39796 ||||| || ||||| |||| | ||||| | | | | || | ||| | ||| Sbjct 20835 CCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAATGATTCTGCACCATCA---ATC 20779 Query 39797 CACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 39856 || | ||||||||||| |||||||| |||||||| || ||||| || ||| ||| Sbjct 20778 CAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAAA 20719 Query 39857 AGATAATGTTTTTCA--TCACTATCTTTAACATATGTATCTATTAACAGACTATACATTT 39914 |||| | |||| | | | |||||| | ||| || |||| | ||| ||||||| Sbjct 20718 AGATG--GGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAGAAGAGAGTACATTT 20661 Query 39915 CTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTT 39974 | || || ||||||||||| || || || || || || ||| | ||||||| || | Sbjct 20660 CAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAACCT 20601 Query 39975 GTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAA 40034 | |||||| |||||| | || | ||| || ||||| || ||| ||||| | Sbjct 20600 GGACCTCTTTCATGAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTCAGATGCGGCGA 20541 Query 40035 AAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATT---TATTCCAGT 40091 | || || | | || | || |||| | ||| |||| || || | | ||||| Sbjct 20540 AGAAGGCAAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGACGGTTTCCCAGT 20481 Query 40092 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTT 40151 | | ||||| ||| | ||| |||||||| || ||||| ||||| || || || |||| Sbjct 20480 GACGAACATCTTGTGAAAGATCGACTTCTTCGGCAGTCCAGAACGAAGCTTCAGCTTTTT 20421 Query 40152 TGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTT 40211 ||||||| | ||| || | | |||| ||||| || ||| ||||||| ||| |||| Sbjct 20420 TGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGTTTT 20361 Query 40212 TTG 40214 || Sbjct 20360 CTG 20358 >seq558 Length=1338247 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || || || | |||| ||||| | ||| | || | |||||| || | ||| || Sbjct 392551 TCCCCCTTGGTCAACATATCGTGCAGTATCATTGAACACCCGCAGCATAGGGACAATGCC 392610 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | ||||| || || |||||||||||| | || ||||| || | ||| Sbjct 392611 ATTTGATGTCCCATTAGTACCGCGAATATAACTTCCAGTGGCACGAATGTTGTGCACAGA 392670 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || ||||| || || || | |||||| |||| || ||||| || Sbjct 392671 AACACCAATACCTCCAGCAGACTTGCTAATAACAGCACACTCCTTCAGAGTATCATAGAT 392730 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || |||||||| ||| ||||||| | ||| || |||||| Sbjct 392731 TCCTTCAATGCTATCGTCTTTCATGTTGATAAGGAAGCAGCTA 392773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686882929297320