Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq958 125 6e-24 seq758 116 3e-21 seq1558 113 4e-20 seq2360 96.9 3e-15 seq2371 91.5 1e-13 seq2306 86.0 5e-12 >seq958 Length=433838 Score = 125 bits (138), Expect = 6e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || ||||| ||||||||| || | || ||| | |||||||||||||| || Sbjct 311933 GTGGATTCCTTCTGAATGTTGTAGTCGGCTAAAGT-GCGGCCATCTTCGAGCTGTTTTCC 311991 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | |||||||| ||||| || || || | || ||||| || ||||||| ||| Sbjct 311992 GGCGAAGATGAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTGTCCTGGATCTTGGCTTT 312051 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | || || | || ||| |||||||| ||||| | ||| ||||| || || Sbjct 312052 GACATTGTCGATGGTATCCGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTTAGGGT 312111 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||| ||||| ||||| Sbjct 312112 TTTCACGAAGATCTGCAT 312129 >seq758 Length=475707 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || || || ||||||||| || | || ||| ||||||||||||| || || Sbjct 367607 GTCGATTCCTTCTGGATGTTGTAGTCGGCTAAAGT-GCGGCCGTCTTCGAGCTGCTTTCC 367665 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| ||||||| || ||||| || || || | || ||||| || |||||| ||| Sbjct 367666 GGCGAAAATGAGGCGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATCTTTGCTTT 367725 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | || ||| || ||||| ||||| | ||| ||||| || || Sbjct 367726 GACATTGTCGATTGTGTCCGAGGATTCTACCTCTAGGGTTATGGTTTTACCCGTTAGGGT 367785 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||| ||||| ||||| Sbjct 367786 TTTCACGAAGATCTGCAT 367803 >seq1558 Length=1070493 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | |||| ||||||| |||||||| ||| Sbjct 239348 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCAAGCTGTTTTCCG 239289 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || || || || | || || || || |||||| | ||| Sbjct 239288 GCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTAGTCTTC 239229 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||||| || |||||| ||||| ||||| | ||| || || || ||| Sbjct 239228 ACATTGTCGATGGTGTCTGAGGATTCAACCTCTAGGGTTATTGTTTTCCCAGTTAGGGTT 239169 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| || || ||||| Sbjct 239168 TTCACGAATATCTGCAT 239152 >seq2360 Length=898569 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| || | |||||||| | ||||| || || ||||| || ||||| Sbjct 280757 CCTCCCCTCAAACGGAGAACCAAATGCAGAGTAGACTCCTTCTGAATGTTATAGTCTGCA 280698 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | || || ||||| || || ||| |||| || | ||| || || || || Sbjct 280697 AGAGTCCGGCCATCCTCAAGCTGCTTCCCTGCGAAAATAAGCCTCTGCTGGTCTGGTGGG 280638 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||||||||| ||||| | |||| | || | ||||| | | ||||||| Sbjct 280637 ATCCCCTCTTTATCCTGTATCTTTGTCTTCACATTCTCAATGGTGTCGGAAGTTTCAACT 280578 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || || | ||||| |||||||| || |||||||| |||||| Sbjct 280577 TCCAAGGTAATCGTCTTGCCTGTCAGAGTCTTGACAAAGATCTGCATA 280530 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || ||||| || ||||||||| || ||| || | || || | ||| ||||| Sbjct 280499 GTGGACTCCTTTTGGATGTTGTAGTCGGCTAGAGTTCTGC-CATCATCCAACTGCTTACC 280441 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | ||||| | ||| || ||||| || | |||||| ||||| || ||| | || Sbjct 280440 AGCGAAGATGAGCCTCTGCTGGTCCGGTGGTATACCCTCCTTATCTTGAATTTTGGTCTT 280381 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | |||||| | | || || || || || || | ||||| ||||| || Sbjct 280380 GACATTCTCAATAGTGTCAGATGTCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGT 280321 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||||||||||||||| Sbjct 280320 TTTCACAAAGATTTGCAT 280303 >seq2371 Length=888473 Score = 91.5 bits (100), Expect = 1e-13 Identities = 135/190 (71%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 27058 CTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAA 27117 |||| || || ||||| ||||| || || |||||||| ||||| || ||||| | | Sbjct 99674 CTTTCTGGATGTTGTAATCGCTAGAGTA-CGGTCGTCTTCAAGCTGCTTTTCGGCGAAGA 99616 Query 27118 TGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTT 27177 |||||||| ||||||| || | | || ||||| || ||| || || | | | | Sbjct 99615 TGAGACGCAGTTGATCGGGTTGAATGCCTTCTTTGTCATGGATTTTAGCCTTGACGTTGT 99556 Query 27178 CTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAA 27237 | || || | | |||||| || || || || | ||| ||||| ||||||||||||| Sbjct 99555 TAATGGTATCACTAGTTTCAACCTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTCACAA 99496 Query 27238 AGATTTGCAT 27247 | |||||||| Sbjct 99495 ATATTTGCAT 99486 >seq2306 Length=232912 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | |||||||| | || || || || || || |||||||| Sbjct 177015 CCACCACGCAGACGGAGCACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCA 177074 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | ||||| | ||||||||||| || |||||| | || | | |||||| || || || Sbjct 177075 AGGGTGCGCCCATCTTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGTTGGTCTGGGGGA 177134 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || ||||| || | | || | ||| || | | || ||| Sbjct 177135 ATACCCTCCTTGTCTTGAATCTTAGACTTGACATTGTCAATAGTATCGGAGCTCTCGACT 177194 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || || || ||||| || |||||||||||||| Sbjct 177195 TCGAGGGTGATGGTCTTCCCAGTGAGAGTCTTGACAAAGATTTGCAT 177241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424918796010456