Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq781 127 3e-24 seq558 116 5e-21 seq403 104 3e-17 >seq781 Length=476855 Score = 127 bits (140), Expect = 3e-24 Identities = 280/418 (67%), Gaps = 4/418 (1%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | ||||| || |||| ||| | || ||||| | | |||||| Sbjct 28798 TCAAGAATGTCTGCCCTGTTAGTTGCAGCAACAACAATGATACCAGTGTTACCCTCAAAG 28739 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 ||||||||||| || || | ||||| | ||| ||||| || ||||||||| || | Sbjct 28738 CCATCCATCTCAGTTAGAAGCTGATTCAATGTCTGTTCCCTTTCATCATTTCCTCCCCCG 28679 Query 11603 CCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT 11662 |||| || | |||| | || || |||||||| ||||||| || ||||| || || Sbjct 28678 ATTCCAGTACCTCTTTGCCTTCCTACTGCATCAATTTCATCAACAAACACAATGCAAGGA 28619 Query 11663 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAAC 11722 |||||| || | | || |||||||| || | || ||||||||||||||| Sbjct 28618 GCATTTTCTTTTGCCTTCTTGAAAAGATCGCGCACTCGAGATGCTCCCACACCAACAAAC 28559 Query 11723 ATCTCCACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCGCGA 11780 || || ||||| | || |||| | || || || || ||| | ||| || || | Sbjct 28558 ATTTCAACAAACTCTGACCCAGA--AATGGAGAAAAAAGGAACACCAGCTTCTCCAGCAA 28501 Query 11781 TGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGG 11840 | || || || || ||||||||||| |||||| || | || || | || | Sbjct 28500 TAGCCTTAGCCAGTAGAGTCTTTCCCGTCCCTGGCGGGCCAACAAGCAGAACACCCTTAG 28441 Query 11841 GGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 |||| ||| ||| || | | || || |||| || ||||| ||||||| ||| Sbjct 28440 GGATGCGGGCTCCAACAGCAGTAAACCTTTCAGGTTTTTTCAGAAATTCCACAACCTC 28383 >seq558 Length=1338247 Score = 116 bits (128), Expect = 5e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || |||||||| || ||||||||||| ||||| | || || ||||| | |||| Sbjct 392893 TGAGGCCTTGGTGTGCCGGCATTGAAGAGAGTTGGAGAAGCATGGGTGAACCACCTTTGG 392952 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| || |||||||| | | | || ||||| || ||| |||||| || | || Sbjct 392953 GACATCAAGTGGTATGTCTTGATGGCCGACTCAATATCATCCTTGTGGATCCCAACAGCA 393012 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA- 112119 |||| ||| ||||||| ||| || | |||| | | || | || | | ||||| Sbjct 393013 ACCCTCATCAACATGTGCTGAGGTCTCTCCACAACTGTCCCTTGGACCTTCAGGAGATAT 393072 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | || ||||||||||||| | ||||||| || || | ||| ||||||| Sbjct 393073 GATC-TCTCAAGGGTTTTAAAACCAAAGAAATCATAGTCAAAGTCCCG 393119 >seq403 Length=521970 Score = 104 bits (114), Expect = 3e-17 Identities = 145/201 (72%), Gaps = 12/201 (6%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | || ||||| || || ||||| |||||||||||| | Sbjct 212244 AAACCCATCCATCTCAGTCAACAACTGATTGATAGTCTGTTCCCTCTCATCATTTCC--A 212301 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| || || | | |||| | || || ||||||||||||||||| || ||||| Sbjct 212302 CCTCCCATTCCTGCTCCTCTTTGCCTCCCAACAGCATCAATCTCATCAATAAACACAATG 212361 Query 11657 CATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCAC 11712 || || || | ||| || | ||||| | ||| | ||||| || ||||| Sbjct 212362 CAAGGAGCCTTACTCTTC----GCCTTCTCAAACAAATCCCTCACCCTGGAAGCTCCCAC 212417 Query 11713 ACCAACAAACATCTCCACAAA 11733 ||||||||||| ||||||||| Sbjct 212418 ACCAACAAACAGCTCCACAAA 212438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628008346744800