Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq781 122 1e-22 seq403 104 3e-17 seq558 93.3 5e-14 >seq781 Length=476855 Score = 122 bits (134), Expect = 1e-22 Identities = 231/335 (69%), Gaps = 4/335 (1%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || || | | || || || || | |||| ||||| || | | ||||| Sbjct 28798 TCAAGAATGTCTGCCCTGTTAGTTGCAGCAACAACAATGATACCAGTGTTACCCTCAAAG 28739 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 ||||||||||| || | ||| || || | || ||||||| ||||||||| || | Sbjct 28738 CCATCCATCTCAGTTAGAAGCTGATTCAATGTCTGTTCCCTTTCATCATTTCCTCCCCCG 28679 Query 9677 CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT 9736 |||| || | |||| |||| || |||||||| ||||||| || || ||||| || Sbjct 28678 ATTCCAGTACCTCTTTGCCTTCCTACTGCATCAATTTCATCAACAAACACAATGCAAGGA 28619 Query 9737 TGATTTTCGCGAGCGA-CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAA 9795 |||||| || ||| ||| ||||| || || || || |||||||||||||| Sbjct 28618 GCATTTTCTTTTGCCTTCTTGAAA-AGATCGCGCACTCGAGATGCTCCCACACCAACAAA 28560 Query 9796 CATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAA 9854 ||| || ||||| | || | ||| || | || || || ||| || ||| || |||| Sbjct 28559 CATTTCAACAAACTCTGACCCAGAA-ATGGAGAAAAAAGGAACACCAGCTTCTCCAGCAA 28501 Query 9855 TGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9889 | || || || |||||||| ||||| |||||| Sbjct 28500 TAGCCTTAGCCAGTAGAGTCTTTCCCGTCCCTGGC 28466 >seq403 Length=521970 Score = 104 bits (114), Expect = 3e-17 Identities = 252/377 (67%), Gaps = 16/377 (4%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| ||||| | || || ||||| ||||||| |||||||| | Sbjct 212244 AAACCCATCCATCTCAGTCAACAACTGATTGATAGTCTGTTCCCTCTCATCATTTCC--A 212301 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | ||| || || | | |||| | || || ||||||||||||||||| || || ||| Sbjct 212302 CCTCCCATTCCTGCTCCTCTTTGCCTCCCAACAGCATCAATCTCATCAATAAACACAATG 212361 Query 9731 CATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCC 9784 || || || | ||||| | ||||| | ||||| ||| || | || ||| Sbjct 212362 CAAGGAGCCTTACTCTTCGCCTTC----TCAAACAAATCCC--TCACCCTGGAAGCTCCC 212415 Query 9785 ACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGAT 9844 ||||||||||||| ||||||||| | | || | ||| | ||| || ||| | Sbjct 212416 ACACCAACAAACAGCTCCACAAACTCAGAAGCTGCACACGAAAAGAACGGCACACCGGCC 212475 Query 9845 TCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGG 9904 ||||| || | || | || | | ||||| || || || || ||| | ||||| Sbjct 212476 TCACCAGCGACCGCCCTCGCCAACAATGTCTTTCCGGTTCCAGGGGGGCCCACAAGGAGA 212535 Query 9905 GCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCC 9964 ||| ||| || || || || | || ||| | ||||| | ||| | ||| ||| Sbjct 212536 CACCCTTTTGGGATTTTAGCCCCCAATGCAGTGTACTTATCAGGGTTCTTCAAAAAGTCC 212595 Query 9965 ACAATTTCTTCCAATTC 9981 |||| ||| | |||||| Sbjct 212596 ACAACTTCCTGCAATTC 212612 >seq558 Length=1338247 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCA-ACGGC 104198 |||| |||| || || |||||| | ||||||||||||| || | ||||| | | || Sbjct 393116 GACTTTGACTATGATTTCTTTGGTTTTAAAACCCTTGAGA-GATCATATCTCCTGAAGGT 393058 Query 104199 TCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTC 104258 | | || ||| |||| | || ||| ||||||| ||| | || || | || || | Sbjct 393057 CCAAGGGACAGTTG-TGGAGAGACCTCAGCACATGTTGATGAGGGTTGCTGTTGGGATCC 392999 Query 104259 ATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCA 104318 | ||| || ||||| || | | | |||||||| || |||||||||| | ||||| Sbjct 392998 ACAAGGATGATATTGAGTCGGCCATCAAGACATACCACTTGATGTCCCAAAGGTGGTTCA 392939 Query 104319 TTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 || || | ||||| ||||||||||| || |||||||| || ||| Sbjct 392938 CCCATGCTTCTCCAACTCTCTTCAATGCCGGCACACCAAGGCCTCAA 392892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583238832940120