Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2659 134 2e-26 >seq2659 Length=772501 Score = 134 bits (148), Expect = 2e-26 Identities = 354/534 (66%), Gaps = 10/534 (2%) Strand=Plus/Plus Query 59891 TCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCA 59950 ||| || ||||| || || || ||| ||||| | || || || ||||| | | Sbjct 20716 TCTTTTTCGTGCAATTGAAACTATCCCTTGTGTTAAGAAGAAGGCTGATTGGGCTCTTCG 20775 Query 59951 GTGGATGAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGG 60010 ||||| | || || ||||||||| | | | || |||||||| || || ||||| Sbjct 20776 TTGGATTGATGGTGCAGAATCATTTGCTGAGAGGTTAATTGCTTTTGCTTGTGTTGAAGG 20835 Query 60011 AATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCC 60070 || |||||||| || || || | || |||||||| ||||||||||| | ||||| Sbjct 20836 GATTTTCTTCTCCGGGAGTTTTTGCTCCATCTTCTGGCTTAAAAAGCGTGGGTTAATGCC 20895 Query 60071 GGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130 ||| | | ||||| ||||||||||| || || ||||| || || ||| || ||||| Sbjct 20896 GGGTTTAACCTTCTCGAACGAGCTGATATCGCGAGACGAAGGGCTTCATTGTGACTTTGC 20955 Query 60131 AGTGACGCTCTATT-CACA-CCTATTGGA-AAAATGC--CCTTCCAAGGATATTCACAAG 60185 || ||| || ||| | || || | || | || | || | |||| | Sbjct 20956 -TTG----TCTGTTGTACAGCTTACTGAAGAAGAAGCTGAGTGTGGAGAAGGTTCAGGGG 21010 Query 60186 ATTGTTCAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAA 60245 || || || || || | ||| | |||||| | || || |||||||| || Sbjct 21011 ATAGTGAAGGATGCAGTCGATATCGAGCGAGAGTTCGTAACTGATGCGCTTCCGGTGAAG 21070 Query 60246 CTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTC 60305 || | || ||| || || |||| ||||||||| ||||||| || ||| | || Sbjct 21071 CTGGTTGGGATGAACTGTGAGCTGATGAGTCAGTACATTGAGTTTGTTGCAGACAGACTG 21130 Query 60306 ATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAG 60365 |||| | | || | | | ||||||| || | ||||| ||||| ||||||||| Sbjct 21131 TTGGCTGCGCTCGGGTACGAAAAGGTTTACGGAGTTCAGAACCCATTCGATTGGATGGAG 21190 Query 60366 ACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTAT 60419 ||||| | |||||||||| || |||||||||||| | || ||||| ||| Sbjct 21191 TTGATCTCTCTTCAAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGGGAGTAT 21244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548504141184720