Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2471 84.2 2e-11 seq2283 82.4 8e-11 seq736 82.4 8e-11 >seq2471 Length=866180 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 419242 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 419183 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||| ||||| Sbjct 419182 TGAGCTACGAGAGCAA 419167 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 429647 GAATGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 429588 Query 79681 AATTGAGCTACGAAAGCA 79698 || |||||||||| |||| Sbjct 429587 AACTGAGCTACGAGAGCA 429570 >seq2283 Length=253045 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 216416 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 216357 Query 79684 TGAGCTACGAAAGCAAA 79700 ||||||| |||||| || Sbjct 216356 TGAGCTATGAAAGCGAA 216340 >seq736 Length=476856 Score = 82.4 bits (90), Expect = 8e-11 Identities = 79/102 (77%), Gaps = 11/102 (11%) Strand=Plus/Minus Query 79709 TCTGACCTGGCGGAATCGAACCACCGACCTAAAGATGACTGAACATCCGGATTAGAGCAC 79768 || |||||| ||||||||||||| ||||||||||||| | ||| || || || | | Sbjct 405310 TCCGACCTGCCGGAATCGAACCAGCGACCTAAAGATGCCGGAA-----GGCTTTGAACCC 405256 Query 79769 ACTCGCTCTACAGTCTTTCGCTCTACCAATTGAGCTAAGGTC 79810 | |||||||||| |||||| |||| |||||||||||| Sbjct 405255 A------CTACAGTCTTCCGCTCTGCCAACTGAGCTAAGGTC 405220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547195390477400