Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq1325 495 4e-135 seq1658 426 2e-114 seq579 93.3 5e-14 >seq1325 Length=385796 Score = 495 bits (548), Expect = 4e-135 Identities = 697/974 (72%), Gaps = 5/974 (1%) Strand=Plus/Plus Query 176128 ACCAATACAAACAACAGAATTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTG 176187 ||||| || || ||||| |||| |||| ||||||||||| | ||||| ||| | Sbjct 7000 ACCAACACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCAACCTTA 7059 Query 176188 CTCACTGCTGCAGCATGT-TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGA 176246 | ||||| | | ||| ||||| | || || ||||| || || | || ||||| || Sbjct 7060 TTGACTGCAACTTC-TGTATTTATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGA 7118 Query 176247 CGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGC 176306 |||||||| |||| || | || |||||||| || |||||||| || || || || || Sbjct 7119 TGGTATTCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGC 7178 Query 176307 AGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAAC 176366 | | || | || || || || | ||||| || ||||| ||||||||||| | Sbjct 7179 CATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTC 7238 Query 176367 AGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTAT 176426 ||||| || ||| | ||||| ||||| || || |||| |||| | |||| | | Sbjct 7239 GGTTGATGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACT 7298 Query 176427 CGGTATCTCAGCTTACATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCC 176486 ||| | || ||| ||||| || | ||||||||||||| | | || || ||||| || Sbjct 7299 TGGTGTAGCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCC 7358 Query 176487 TTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTA 176546 |||||| ||||||||| || || || || | || || | | |||||| | |||| Sbjct 7359 TTGGATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGTTGTTTTCTTGATCTA 7418 Query 176547 TCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAA 176606 | | | ||||||||| || ||||||||||||||||| || || || |||| ||||| Sbjct 7419 CCTAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAA 7478 Query 176607 CTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGG 176666 ||||||| |||||||||| || ||||||||||| || ||||| ||||| | ||| | || Sbjct 7479 CTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGG 7538 Query 176667 AGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTC 176726 ||||| |||||||| | || ||||||| || ||||| || | || ||||| Sbjct 7539 TGTAGCTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCATGGTTCCTTGGTAACTTC 7598 Query 176727 TTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACA 176786 | | | || || || || |||| ||||| || | ||||||| |||| | || Sbjct 7599 TAGTTTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGCA 7658 Query 176787 AGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCA 176846 ||| ||||| || || || ||||||||||| || ||||| || || || | ||||| || Sbjct 7659 AGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCA 7718 Query 176847 GTATGCTTCTTTCAATAACTCAAGAAGTCTTCA-CTTCTTCCTTGCAGCATTCCCAGTTG 176905 |||||| |||||| ||||| | |||| | ||||||| | || || | || || | Sbjct 7719 ATATGCTAGTTTCAACAACTCTCG--TTCTTTACCTTCTTCTTAGCTGCTTGGCCTGTAG 7776 Query 176906 TTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCA 176965 | | || ||||||||||| | ||| || | || ||||| |||||| | || ||||||| Sbjct 7777 TAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCA 7836 Query 176966 ACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCC 177025 | |||||||| ||||| | || | ||| || |||| ||| |||| |||||| Sbjct 7837 ATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACTTGGGCTGATATCA 7896 Query 177026 TTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCAC 177085 |||||| ||| ||| ||||||||||||||||||| || ||||||||||| |||||||| | Sbjct 7897 TTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTC 7956 Query 177086 TTGACCTTGCTGCT 177099 ||||| || ||| Sbjct 7957 AAGACCTAGCCGCT 7970 >seq1658 Length=355568 Score = 426 bits (472), Expect = 2e-114 Identities = 677/964 (70%), Gaps = 14/964 (1%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 |||| |||| ||||||||||| | ||||| || | | ||||| | | ||| Sbjct 187890 TTTATATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTC-TGTA 187832 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || ||||| || || | | ||||| || |||||||| ||||| || Sbjct 187831 TTTATTATAGCCTTCATTGCTGCTCCTCTATTAGATATTGATGGTATTCGTGAACCTGTT 187772 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGG-AGCAGTCGTCCCAAGCTCAAA 176324 | || |||||||| || ||||| || || || || || | || | ||| | | | Sbjct 187771 TCCGGGTCTCTACTTTACGGAAAGAATATTATTTCGGGTACCATTATTCCTACTTTTGCA 187712 Query 176325 CGCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTA 176384 | | || | ||||| || ||||| || ||||| || ||||| || ||| | || Sbjct 187711 -GTTGTAGGGTTGCACTTTTATCCAATATGAGAAGCGGCGTTGGTTGATGAGTGGTTATA 187653 Query 176385 CAATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACAT 176444 ||| || || || || |||| |||| | ||||| | | ||| | || ||| || Sbjct 187652 CAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCATGTTATAT 187593 Query 176445 GGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATA 176504 ||| || | ||||||||||||| | | ||||| ||||| |||||||| ||||||||| Sbjct 187592 GGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGTTGTTGCATA 187533 Query 176505 CTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATC 176564 | || | | | || || | || |||||| | |||| ||| | ||||||||| Sbjct 187532 TTTAGCTCTGATTGCAGCGGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAG 187473 Query 176565 TTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCA 176624 || | ||||||||||||||| | || || ||||| |||||||||||| |||||||| | Sbjct 187472 ATTTTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTTATGATTGTATTCTA 187413 Query 176625 AGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTG------- 176677 || ||||||||||| || ||||| ||||| || ||| | || ||||| |||| Sbjct 187412 GGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGACCTGGT 187353 Query 176678 -TGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTG-T 176735 | || || | ||||||| || ||||| || |||| || || | ||| | Sbjct 187352 GTATTCGGCCGCTCTCTTTCTAGTGCTATGCATGGTTC-CTTGGTAATTTCTAGTTTGAT 187294 Query 176736 TAGAGAGACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGA 176795 ||| || || || ||||| ||||| || | ||||||| |||||| ||||| ||||| Sbjct 187293 TAGGGAAACCACAGAAAATGAATCTGCTAATGAGGGTTACAGATTCGGGCAAGAGGAAGA 187234 Query 176796 GACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTC 176855 || || || ||||||||||| || ||||| || | || | ||||| || ||| || Sbjct 187233 AACTTATAATATTGTAGCTGCTCATGGTTATTTCGCCCGATTGATCTTTCAATATACTAG 187174 Query 176856 TTTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTG 176915 |||||| |||| | | | ||||||||| | || || | || || || | || || Sbjct 187173 TTTCAACTACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTG 187114 Query 176916 GTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCA 176975 ||||| ||| | ||| || | || ||||| |||||| | || |||||||| |||||||| Sbjct 187113 GTTTATTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATTTCAACCA 187054 Query 176976 GTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGC 177035 ||||| | || | ||| || ||| ||| |||| |||||| |||||||||| Sbjct 187053 ATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGC 186994 Query 177036 AAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGC 177095 ||||||||||||||||||||||| || ||||||||||| |||||||| || ||||| || Sbjct 186993 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 186934 Query 177096 TGCT 177099 ||| Sbjct 186933 CGCT 186930 >seq579 Length=36850 Score = 93.3 bits (102), Expect = 5e-14 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 19348 GTGGTCGTATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTAT 19407 ||||||| || |||| ||| ||||| || || || | ||||| |||||||| | | || Sbjct 19964 GTGGTCGAATTCACTTTGAATTTGATAAATGCATTTCTTGTGAAGTGTGTGTTCGTGCAT 20023 Query 19408 GCCCTATCAATCTACCAGTGGTGGATTGGGTGATGAACAAACAGACAA--AGAAGAAAGA 19465 ||||| || | | || ||||||||| | |||| || | | |||||| | Sbjct 20024 TTCCTATGGATTTGCTTGTTGTGGATTGGAAATCG--CAAATGGATATTCAAAAGAAATA 20081 Query 19466 ACTTAGAAATTATTCGATAGACTTTGGAGCATGTAT--TTTCTGCGGTAACTGCGTAGAG 19523 | ||||| || || |||||| ||||| ||| || ||||| || || ||| Sbjct 20082 GTTGCTTAATTACAACATTGATTTTGGAATTTGTATATTTTTTGTGGTAATTGTGTTGAG 20141 Query 19524 TATTGCCCAACAAACTGTCTATCCATGACAGAAGAATATGA 19564 ||||||||| |||| ||| |||| ||||| ||||||||||| Sbjct 20142 TATTGCCCACCAAATTGTTTATCAATGACTGAAGAATATGA 20182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603471670892160