Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1925 96.9 2e-15 seq2448 93.3 3e-14 seq2306 89.7 4e-13 >seq1925 Length=318408 Score = 96.9 bits (106), Expect = 2e-15 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || || || |||||||| ||| || |||| || |||||| | Sbjct 245157 ATGCAGATCTTTGTTAAGACCCTCACTGGGAAGACTATCACCCTTGAGGTTGAAAGCTCT 245216 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| || ||| ||||| ||||| |||||| |||| || | Sbjct 245217 GATACAATTGACAAT--GTTAAAACCAAAATCCAAGACAAGGAAGGTATTCCCCCAGATC 245274 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 |||| |||| || |||||||||||||| | || || | |||| |||| | |||||| Sbjct 245275 AGCAGAGGTTGATCTTTGCCGGAAAACAGCTTGAGGATGGCCGCACTCTTG-CTGATTAC 245333 Query 27967 AACATCCAAAAAGAG 27981 |||||||| |||||| Sbjct 245334 AACATCCAGAAAGAG 245348 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| || || || |||||||| ||| || |||| ||||| | | Sbjct 244929 ATGCAGATTTTTGTTAAGACCCTCACTGGGAAGACTATCACCCTTGAGGTCGAGAATTCT 244988 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| |||||| ||||| ||||| |||||| |||| || | Sbjct 244989 GACACCATTGACAAT--GTCAAAACCAAAATTCAAGACAAGGAAGGTATTCCCCCAGACC 245046 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 |||| |||| || ||||| ||||| ||| | || || | |||| |||| | |||||| Sbjct 245047 AGCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACTCTTG-CTGATTAC 245105 Query 27967 AACATCCAAAAAGAG 27981 |||||||| || ||| Sbjct 245106 AACATCCAGAAGGAG 245120 >seq2448 Length=870776 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| ||||| |||||||| || ||||| ||| || || | ||||||||| Sbjct 350292 AATATGCAGATTTTCGTGAAAACCCTAACTGGTAAAACCATAACCTTAGATGTCGAATCA 350351 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| || ||||| |||||| || || ||||||||||| | || | Sbjct 350352 TCCGACACAATCGACAAT--GTCAAAATCAAGATCCAAGACAAAGAAGGCATCCCACCAG 350409 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGAT 27963 | || ||||| ||||| ||||| || ||||||||||| || | | | | |||| | ||| Sbjct 350410 ATCAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTG-CAGAT 350468 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || || || ||| | |||||||| | || | ||||| || Sbjct 350469 TACAACATTCAGAAGGAATCCACGCTTCATTTGGTGCTTCGACTTCGTGGGGG 350521 >seq2306 Length=232912 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| || ||||| |||||||| || || | || ||||| ||| | Sbjct 177242 AATGCAAATCTTTGTCAAGACTCTCACTGGGAAGACCATCACCCTCGAAGTCGAGAGCTC 177183 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| | || ||||| ||||| || || ||||| || ||| |||| || Sbjct 177182 CGATACTATTGACAAT--GTCAAGTCTAAGATTCAAGACAAGGAGGGTATTCCCCCAGAC 177125 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || |||| || || |||||||| || | || || | |||| | | | || ||| Sbjct 177124 CAACAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAAGATGGGCGCACCCTTGCTGACTAC 177065 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| ||| | |||||||| | ||| ||||||| || Sbjct 177064 AACATCCAGAAGGAGTCCACACTTCATTTGGTGCTCCGTCTGCGTGGTGG 177015 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || || || ||||| ||||| ||||| | || || || ||| || Sbjct 177013 ATGCAGATTTTCGTCAAGACCCTTACCGGGAAGACCATTACTTTGGAGGTTGAGAGCTCC 176954 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || ||||| | | | || || | | || ||||| |||||| |||| || Sbjct 176953 GACACCATTGACAAT-GTTAAGACGAAGATTCAG--GACAAGGAAGGTATTCCCCCAGAC 176897 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| ||||| || || || || | || || | || | ||| |||| ||| Sbjct 176896 CAGCAGAGGTTGATTTTCGCTGGTAAGCAGCTCGAGGATGGTCGTACTTTGGCCGACTAC 176837 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| |||| | |||||||| | |||||| | || || Sbjct 176836 AACATCCAGAAGGAGTCCACTCTCCATTTGGTGCTCCGTTTGAGGGGAGG 176787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355849332399051