Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq958 140 2e-28 seq758 134 9e-27 seq1925 129 4e-25 seq2448 120 2e-22 seq2360 116 3e-21 seq2306 113 3e-20 seq2371 102 6e-17 >seq958 Length=433838 Score = 140 bits (154), Expect = 2e-28 Identities = 153/201 (76%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| |||||||| ||||| ||||| || || || ||||| || ||| Sbjct 312132 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATCC 312073 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||| || | || ||| | ||| | || | | ||||||||||| | || ||||| Sbjct 312072 TCGGATACCATCGACAATGTCAAAGCCAAGA-TCCAGGACAAAGAAGGCATCCCACCAGA 312014 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||| ||| | || || ||||| ||||| || ||||| | |||||||||| ||| || Sbjct 312013 CCAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACTTTAGCCGACTA 311954 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || || ||||| Sbjct 311953 CAACATTCAGAAGGAATCCAC 311933 >seq758 Length=475707 Score = 134 bits (148), Expect = 9e-27 Identities = 152/201 (76%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| |||||||| ||||| ||||| || || || || || || ||| Sbjct 367806 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTAGAATCC 367747 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 ||||||| | || ||| | ||| |||| | | ||||||||||| | || ||||| Sbjct 367746 TCGGACACAATCGACAATGTCAAAGCAAAGA-TCCAAGACAAAGAAGGAATCCCACCAGA 367688 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||| || | || || ||||| || || || ||||||| |||||||||| ||| || Sbjct 367687 CCAACAACGCCTCATTTTCGCCGGAAAGCAGCTCGAAGACGGCCGCACTTTAGCCGACTA 367628 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || || || || Sbjct 367627 CAACATCCAGAAGGAATCGAC 367607 >seq1925 Length=318408 Score = 129 bits (142), Expect = 4e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| |||||||| || || || ||||| || || ||||| | | Sbjct 245157 ATGCAGATCTTTGTTAAGACCCTCACTGGGAAGACTATCACCCTTGAGGTTGAAAGCTCT 245216 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| ||||||| |||| | ||||| |||||| | || |||||||| Sbjct 245217 GATACAATTGACAATGTTAAAACCAAAA-TCCAAGACAAGGAAGGTATTCCCCCAGATCA 245275 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| ||||| || || || | |||||| | | |||||||| Sbjct 245276 GCAGAGGTTGATCTTTGCCGGAAAACAGCTTGAGGATGGCCGCACTCTTGCTGATTACAA 245335 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 245336 CATCCAGAAAGAGTCGAC 245353 Score = 120 bits (132), Expect = 2e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||| |||||||| || || || ||||| || || || || | Sbjct 244929 ATGCAGATTTTTGTTAAGACCCTCACTGGGAAGACTATCACCCTTGAGGTCGAGAATTCT 244988 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||||| |||||| ||||| |||||| | || ||||| || Sbjct 244989 GACACCATTGACAATGTCAAAAC-CAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCA 245047 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || || ||||| ||||| | |||||| | | |||||||| Sbjct 245048 GCAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACTCTTGCTGATTACAA 245107 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 245108 CATCCAGAAGGAGTCGAC 245125 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||| |||||||| || || || ||||| || || ||||| | | Sbjct 245385 ATGCAGATTTTTGTTAAGACCCTCACTGGGAAGACCATCACCCTTGAGGTTGAAAGCTCC 245444 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||||| |||||| ||||| ||||| | || ||||| || Sbjct 245445 GACACCATTGACAATGTCAAAAC-CAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCA 245503 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || ||||| || || || || || |||| || || | | |||||||| Sbjct 245504 ACAGAGACTGATCTTTGCTGGAAAGCAGCTTGAGGACGGGCGTACCCTTGCTGATTACAA 245563 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 245564 CATTCAGAAGGAGTCAAC 245581 >seq2448 Length=870776 Score = 120 bits (132), Expect = 2e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||| || || ||||| || || | || || || || Sbjct 350292 AATATGCAGATTTTCGTGAAAACCCTAACTGGTAAAACCATAACCTTAGATGTCGAATCA 350351 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | |||| || | | ||||||||||| | || ||||| Sbjct 350352 TCCGACACAATCGACAATGTCAAAATCAAGA-TCCAAGACAAAGAAGGCATCCCACCAGA 350410 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| || ||||| ||||| || |||||| ||||||| | | | || | | ||||| Sbjct 350411 TCAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTA 350470 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||||| || || || ||||| | ||||| || Sbjct 350471 CAACATTCAGAAGGAATCCACGCTTCATTTGGT 350503 >seq2360 Length=898569 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || ||||| |||||||| ||||| || ||||| || | | Sbjct 280759 ATGCAGATTTTCGTGAAGACTCTCACTGGAAAAACCATCACCCTGGAAGTCGAAAGCTCT 280818 Query 23671 GACACTGTTGAAAT-ATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || || |||| || ||| ||| |||||||| || | || ||||| || Sbjct 280819 GACACTATCGATATCGTTAAGAC-AAAGATTCAGGACAAAGAGGGAATCCCACCAGACCA 280877 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || |||| || | || || || | |||||||| Sbjct 280878 GCAGAGGCTGATCTTTGCAGGGAAGCAGTTGGATGATGGCCGGACATTGGCTGATTACAA 280937 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || || ||||| || |||| | ||||| ||||||| Sbjct 280938 TATCCAGAAGGAATCTACATTGCACCTAGTGCTCCGGTTGAGAGGAGG 280985 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| ||||| ||||| | | Sbjct 281215 ATGCAGATCTTCGTGAAGACCCTCACTGGGAAGACTATCACCCTCGAGGTTGAGACTTCT 281274 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || || || | || ||||| || ||| | || ||||| || Sbjct 281275 GATACAATTGAGAATGTGAAGACCAAGA-TTCAGGACAAGGAGGGTATCCCCCCAGACCA 281333 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || ||||| || || ||| |||| || | || || || | |||||||| Sbjct 281334 ACAGAGGCTCATCTTTGCAGGGAAGCAATTGGAGGATGGTCGAACCTTGGCTGATTACAA 281393 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || || || || | ||| | ||| Sbjct 281394 CATTCAGAAGGAATCTACCCTCCATCTTGTT 281424 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || ||||| || || || || ||||| ||||| || |||||||| | || Sbjct 280987 ATGCAAATCTTTGTTAAGACGCTTACTGGGAAAACTATCACCCTAGAAGTTGAAAGCTCG 281046 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || || || | || || || || || | || || || || Sbjct 281047 GATACAATTGACAATGTGAAGACGAAGA-TTCAAGATAAGGAGGGCATTCCACCTGACCA 281105 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || ||||| || | | ||||| | |||||||| Sbjct 281106 GCAGAGGATTATCTTTGCTGGGAAGCAGCTGGAGGATGGCAGGACTTTGGCTGATTACAA 281165 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| ||||| || || || | ||||| || Sbjct 281166 CATCCAAAAGGAATCAACCCTGCATTTGGT 281195 >seq2306 Length=232912 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || || || || || ||| | || ||||| | | Sbjct 177013 ATGCAGATTTTCGTCAAGACCCTTACCGGGAAGACCATTACTTTGGAGGTTGAGAGCTCC 176954 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| || || ||| ||||| |||||| | || ||||| || Sbjct 176953 GACACCATTGACAATGTTAAGAC-GAAGATTCAGGACAAGGAAGGTATTCCCCCAGACCA 176895 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || || || || || || || || | || ||||| | ||| ||||| Sbjct 176894 GCAGAGGTTGATTTTCGCTGGTAAGCAGCTCGAGGATGGTCGTACTTTGGCCGACTACAA 176835 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || |||||||| | ||||| || | | ||| | |||||| Sbjct 176834 CATCCAGAAGGAGTCCACTCTCCATTTGGTGCTCCGTTTGAGGGGAGGA 176786 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || ||| | || ||||| || || || || || ||||| | Sbjct 176786 AATGCAGATTTTCGTCAAGACCTTGACCGGAAAGACCATTACCCTGGAGGTTGAGAGTTC 176727 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| | || ||| | || | |||| || ||||| ||||| | || ||||| | Sbjct 176726 GGACACCATCGACAATGTCAAGGCGAAAA-TTCAGGACAAGGAAGGCATCCCCCCAGACC 176668 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || ||||||||||| || |||||||| | | | ||| | | ||||||| Sbjct 176667 AGCAGAGGTTGATTTTTGCCGGCAAGCAGCTGGAAGATGGAAGGACTCTTGCGGATTACA 176608 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 | || ||||| ||||| || | || || || | | ||| | |||||| Sbjct 176607 ATATCCAAAAGGAGTCAACCCTTCACTTGGTGCTCCGATTGAGGGGAGGA 176558 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||||| || ||||| || ||||||||||| ||||| | Sbjct 177697 ATGCAAATCTTTGTGAAGACCCTTACTGGAAAGACCATCACTCTCGAGGTTGAGAGTTCT 177638 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || || || || ||||| ||||| | || ||||| || Sbjct 177637 GACACCATTGACAATGTCAAGAC-TAAGATCCAAGACAAGGAAGGAATTCCCCCAGACCA 177579 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || || ||||| ||||| ||||| |||| || || ||| || ||||| Sbjct 177578 GCAAAGGCTGATCTTCGCCGGAAAACAGCTGGAGGACGGCCGAACCCTAGCTGACTACAA 177519 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| ||||| || Sbjct 177518 CATTCAAAAGGAGTCAAC 177501 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || ||| | || || || || |||||||| || ||||| | | Sbjct 176558 AATGCAGATTTTTGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAGAGCTC 176499 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| || |||| | |||| || ||| ||||| || || | || ||||| || Sbjct 176498 GGATACAATTGATAATGTAAAGGCTAAGATTCAGGACAAGGAGGGGATCCCCCCAGACCA 176439 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || || || || || || | || || | | |||||||| Sbjct 176438 GCAGAGGTTGATCTTTGCTGGTAAGCAGCTCGAGGATGGGCGTACCCTTGCTGATTACAA 176379 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 176378 CATTCAGAAGGAGTCTAC 176361 >seq2371 Length=888473 Score = 102 bits (112), Expect = 6e-17 Identities = 139/193 (72%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || || || ||||| || ||||| ||||| ||||| || || ||||| | Sbjct 99483 AAAATGCAAATATTTGTGAAAACTCTTACGGGTAAAACCATCACCCTTGAGGTTGAAACT 99542 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || || | | | || ||||| |||||||||||| | | || ||| Sbjct 99543 AGTGATACCATTAACAACGTCAAGGCTAAAATCCATGACAAAGAAGGCATTCAACCCGAT 99602 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 |||| |||| | || || |||| || || || |||||||| || ||| || |||||||| Sbjct 99603 CAACTGCGTCTCATCTTCGCCGAAAAGCAGCTTGAAGACGACCGTACTCTA-GCGATTAC 99661 Query 23788 AACATACAAAAAG 23800 ||||| || |||| Sbjct 99662 AACATCCAGAAAG 99674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337997187970604