Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2659 170 2e-37 seq2628 84.2 2e-11 >seq2659 Length=772501 Score = 170 bits (188), Expect = 2e-37 Identities = 545/834 (65%), Gaps = 26/834 (3%) Strand=Plus/Minus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| ||| || ||||||||||| || |||| | || || ||||| |||| || Sbjct 21234 ACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAACTCCATCCAATCGAAT 21175 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 || || | |||| ||||| || || || | | || || ||| || ||| Sbjct 21174 GGGTTCTGAACTCCGTAAACCTTTTCGTACCCGAGCGCAGCCAACAGTCTGTCTGCAACA 21115 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCG 4451 || || || ||||| ||||| || || ||||| || |||| | |||| || ||||| Sbjct 21114 AACTCAATGTACTGACTCATCAGCTCACAGTTCATCCCAACCAGCTTCACCGGAAGCGCA 21055 Query 4452 TATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCT 4511 | || | |||||| | || ||| || || || | | ||| | | | || || Sbjct 21054 TCAGTTACGAACTCTCGCTCGATATCGACTGCATCCTTCACTATCCCCTGAACCTTCTCC 20995 Query 4512 ----TTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAA 4567 | || | || || | |||| | |||| | ||| ||||| |||||||| | Sbjct 20994 ACACTCAGCTTCTTC-TTCAGTAAG---CTGTACAACAGACAAGCAAAGTCACAATGAAG 20939 Query 4568 ACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCT 4626 |||||||||| || | ||||| ||||| || || ||||| || |||||||| || | || Sbjct 20938 CCCTTCGTCTC-GCGATATCAGCTCGTTCGAGAAGGTTAAACCCGGCATTAACCCACGCT 20880 Query 4627 TTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAA 4686 |||||||||| || || | | ||| ||| || ||||| || ||||| || |||| Sbjct 20879 TTTTAAGCCAGAAGATGGAGCAAAAACTCCCGGAGAAGAAAATCCCTTCAACACAAGCAA 20820 Query 4687 ACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGT 4746 | || | ||| | | || || || || |||||| | ||||| | Sbjct 20819 AAGCAATTAACCTCTCAGCAAATGATTCTGCACCATC---AATCCAACGAAGAGCCCAAT 20763 Query 4747 TAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTT----T 4802 ||| || |||||||| || || || || | || || ||| | | |||| | Sbjct 20762 CAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAAAAGATGGGTTTTAAGGT 20703 Query 4803 TCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTT 4862 | ||| ||| |||||||| |||| || || ||||||||||| || || ||| Sbjct 20702 TAGAAT----CTTTGATATAAGTTTCTAAAAGAAGAGAGTACATTTCAGAGTGAATGTTT 20647 Query 4863 TCTATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACA 4921 || || || || || || || || ||||| | |||||| | || || || || || Sbjct 20646 TCAATGGCGATTTGGAAGCCATAGAAAGCG-CGAGCTTCAGCAACCTGGACCTCTTTCAT 20588 Query 4922 AAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAAC 4981 |||||| | | | || ||| ||||| |||||| || || || || || | | Sbjct 20587 GAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTCAGATGCGGCGAAGAAGGCAAGGAT 20528 Query 4982 ATGAGATATAAAGTACTGTTCGTCAG-GCTTAAGTT--TTTTCCAGTGGGGCAAATCTTT 5038 || | || || | ||||||||| | | ||||| ||| |||||| | | ||||| Sbjct 20527 GTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGACGGTTTCCCAGTGACGAACATCTTG 20468 Query 5039 AGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092 | | ||| |||||||| ||||||| ||||| ||||| |||||||||||||| Sbjct 20467 TGAAAGATCGACTTCTTCGGCAGTCCAGAACGAAGCTTCAGCTTTTTTGTACAT 20414 >seq2628 Length=130910 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 4547 ACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAA 4606 ||| ||||||||||| || | |||||||| || || || ||||| ||| | ||||| Sbjct 123099 ACAGGCAAAATCACAGTGTAGGCCTTCGTCCCTTGATATAAGCTCGTTTGAATAAGTTAA 123158 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGC 4645 || ||||| | ||||||||||||||||||||||| || Sbjct 123159 ACCAGGCATCATGCCTCTCTTTTTAAGCCAAAATATGGC 123197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427033918338329