Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2659 241 2e-58 >seq2659 Length=772501 Score = 241 bits (266), Expect = 2e-58 Identities = 600/901 (67%), Gaps = 19/901 (2%) Strand=Plus/Minus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 ||| ||||| || || || | ||||| || |||||||| || |||| | || || Sbjct 21250 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAA 21191 Query 47909 TTCCATAAAATCAAATGGATTAACTGCATTA--TAAAtttttttAAATCCTAATTCTGAA 47966 ||||| |||| ||||| || ||| | | |||| |||| | || | | | Sbjct 21190 CTCCATCCAATCGAATGGGTT--CTGAACTCCGTAAACCTTTTCGTACCCGAGCGCAGCC 21133 Query 47967 ATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATA 48026 | |||||| |||||||| || || || || |||||| ||||| ||||| || | Sbjct 21132 AACAGTCTGTCTGCAACAAACTCAATGTACTGACTCATCAGCTCACAGTTCATCCCAACC 21073 Query 48027 AGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATT 48086 || || || || || || || || | |||||| | |||||| ||| |||||| | | Sbjct 21072 AGCTTCACCGGAAGCGCATCAGTTACGAACTCTCGCTCGATATCGACTGCATCCTTCACT 21013 Query 48087 ATCGATGTTACCGTTTCCTCACTTGGTGGATACAACA--AATGTTTAAACATTAAACATG 48144 ||| ||| | ||| |||| | | | || || | || || | ||| | Sbjct 21012 ATCCCCTGAACCTTCTCCACACTCAGCTTCTTCTTCAGTAAGCTGTA--CAACAGACAAG 20955 Query 48145 CAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGG 48204 |||| ||||||||||| ||||| |||| || | ||||| || || || | ||| | Sbjct 20954 CAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAACCCG 20895 Query 48205 GCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAA-AAGAATATG 48263 |||||| ||||| ||||| ||||| || || | || ||| ||| | | ||||| || Sbjct 20894 GCATTAACCCACGCTTTTTAAGCCAGAAGATGGA-GCAAAAACTCCCGGAGAAGAAAATC 20836 Query 48264 CCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGG--CTTCGTTGTGTATCC 48321 ||||| || ||||| || | | ||||| | || || || | | |||| Sbjct 20835 CCTTCAACACAAGCAAAAGCAATTAACCTCTCAGC--AAATGATTCTGCACCATCAATCC 20778 Query 48322 ACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 48381 | || | |||||||||||||||||||| |||||||| || ||||| || ||| ||| | Sbjct 20777 AACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAAAA 20718 Query 48382 GAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGG 48441 || | |||| || |||||| | ||||| |||| | |||| |||||||| | Sbjct 20717 GATGGGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAGAAGAGAGTACATTTCAG 20658 Query 48442 AGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTA 48501 ||||||| |||||||| || || || || || || ||| | ||||| | | ||| | Sbjct 20657 AGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAACCTGGA 20598 Query 48502 CCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAA 48561 |||| | |||| | | || | |||||| ||||| || ||| || || || | Sbjct 20597 CCTCTTTCATGAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTCAGATGCGGCGAAGA 20538 Query 48562 ATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCA----GTTTATTCCAGTCA 48617 | || | | || | || |||| | ||||| ||| || | | || | ||||| | Sbjct 20537 AGGCAAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGACGGTT-TCCCAGTGA 20479 Query 48618 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTA 48677 | ||||| ||| | ||| |||||||| || ||||| || || || || |||||||| Sbjct 20478 CGAACATCTTGTGAAAGATCGACTTCTTCGGCAGTCCAGAACGAAGCTTCAGCTTTTTTG 20419 Query 48678 TACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTT 48737 ||||| | ||| || | ||||| |||||||| ||| ||||||| ||| |||| | Sbjct 20418 TACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGTTTTCT 20359 Query 48738 G 48738 | Sbjct 20358 G 20358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694642637036320