Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2659 242 5e-59 seq558 89.7 7e-13 >seq2659 Length=772501 Score = 242 bits (268), Expect = 5e-59 Identities = 598/899 (67%), Gaps = 15/899 (2%) Strand=Plus/Minus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||| || || || || || | ||||| || |||||||| || |||| | || || Sbjct 21250 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAA 21191 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 ||||| |||| || || || ||| |||| |||| | || | | | | Sbjct 21190 CTCCATCCAATCGAATGGGTTCTGAACTCCGTAAACCTTTTCGTACCCGAGCGCAGCCAA 21131 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 |||||| |||||||| || || || ||| |||||| ||||| ||||| || | || Sbjct 21130 CAGTCTGTCTGCAACAAACTCAATGTACTGACTCATCAGCTCACAGTTCATCCCAACCAG 21071 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 || ||||| || || || || | |||||| | || ||| ||| |||||| | ||| Sbjct 21070 CTTCACCGGAAGCGCATCAGTTACGAACTCTCGCTCGATATCGACTGCATCCTTCACTAT 21011 Query 46578 CGATGTTACTGTTTCCTCACTTGGTGGATGCATCA--AATGTTTAAACATTAAACATGCA 46635 | || | ||| |||| | | | ||| || | || || | ||| ||| Sbjct 21010 CCCCTGAACCTTCTCCACACTCAGCTTCTTCTTCAGTAAGCTGTA--CAACAGACAAGCA 20953 Query 46636 AAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGC 46695 || ||||||||||| ||||| |||| || | ||||| || || || | || ||| Sbjct 20952 AAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAACCCGGC 20893 Query 46696 ATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAA-AAGAATATGCC 46754 |||| ||||||||||| ||||| || || | || ||| ||| | | ||||| || || Sbjct 20892 ATTAACCCACGCTTTTTAAGCCAGAAGATGGA-GCAAAAACTCCCGGAGAAGAAAATCCC 20834 Query 46755 TTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGG--CATCATTATGAATCCAC 46812 ||| ||| || || || | | ||||| | || || | || || |||||| Sbjct 20833 TTCAACACAAGCAAAAGCAATTAACCTCTCAGC--AAATGATTCTGCACCATCAATCCAA 20776 Query 46813 CTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 46872 | |||||||||||||||| ||||| |||||||| || ||||| || ||| ||| ||| Sbjct 20775 CGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAAAAGA 20716 Query 46873 AAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAA 46932 | |||| | | |||||| | ||| || |||| | |||| |||||||| || Sbjct 20715 TGGGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAGAAGAGAGTACATTTCAGAG 20656 Query 46933 TGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACC 46992 |||||||||||||| || || || || || || ||| | ||||||| || ||| ||| Sbjct 20655 TGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAACCTGGACC 20596 Query 46993 TCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAAT 47052 ||| | |||| | | | | |||||| ||||| || ||| || || || || Sbjct 20595 TCTTTCATGAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTCAGATGCGGCGAAGAAG 20536 Query 47053 GCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCA----GTTTATTCCAGTCATT 47108 || | | || | || |||| | ||| |||| || | | || | ||||| | Sbjct 20535 GCAAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGACGGTT-TCCCAGTGACG 20477 Query 47109 GATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATA 47168 | ||||| ||| | ||| |||||||| || |||||||| || || || |||||||| || Sbjct 20476 AACATCTTGTGAAAGATCGACTTCTTCGGCAGTCCAGAACGAAGCTTCAGCTTTTTTGTA 20417 Query 47169 CATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTG 47227 ||| | ||| || | | |||| || || || ||| ||||||| ||| |||| || Sbjct 20416 CATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGTTTTCTG 20358 >seq558 Length=1338247 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || || || | ||||| ||||| | ||| | || | || ||| || | |||||| Sbjct 392552 CCCCCTTGGTCAACATATCGTGCAGTATCATTGAACACCCGCAGCATAGGGACAATGCCA 392611 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| ||||| || || ||||||||||||| |||||||| || | ||| Sbjct 392612 TTTGATGTCCCATTAGTACCGCGAATATAACTTCCAGTGGCACGAATGTTGTGCACAGAA 392671 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || ||||| || || || | |||||| |||| || |||||||| Sbjct 392672 ACACCAATACCTCCAGCAGACTTGCTAATAACAGCACACTCCTTCAGAGTATCATAGATT 392731 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || || ||||| || ||||||| | ||| || |||||| Sbjct 392732 CCTTCAATGCTATCGTCTTTCATGTTGATAAGGAAGCAGCTA 392773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712907549108160