Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq1325 578 5e-160 seq1658 542 4e-149 seq2002 435 4e-117 seq2646 89.7 6e-13 >seq1325 Length=385796 Score = 578 bits (640), Expect = 5e-160 Identities = 726/990 (73%), Gaps = 5/990 (1%) Strand=Plus/Plus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 |||||| | | ||| |||| |||||| ||| | || ||| | || |||||||| | Sbjct 6984 CTTCTGTAACTTGATAACCAACACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTT 7043 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTC 183313 |||||| ||||| | ||| | ||||| |||| || || | |||||| | ||||||| Sbjct 7044 GATGATCCCAACCTTATTGACTGCAACT-TCTGTATTTATTTTAGCCTTCATTGCTGCTC 7102 Query 183314 CTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACA 183373 ||| || || || || || || || |||| ||| | ||||| || | || ||||||| Sbjct 7103 CTCTAGTAGATATTGATGGTATTCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACA 7162 Query 183374 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCA 183433 | || || || ||||| || ||||| |||| || || || | ||||| ||||| | Sbjct 7163 ATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAA 7222 Query 183434 TCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAG 183493 | ||||||||||| || | ||||||||| | || ||||| |||||||| |||| | | Sbjct 7223 TATGGGAAGCAGCGTCGGTTGATGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTG 7282 Query 183494 TCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACC 183553 | | |||| | |||| || || || |||||||||||||||||| | || || Sbjct 7283 TTCTAAACTTTTTACTTGGTGTAGCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 7342 Query 183554 GTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCG 183613 |||| |||||||| |||||||| |||||| ||| || || ||||| || || || | Sbjct 7343 GTCTGGGTATGCGCCCTTGGATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTG 7402 Query 183614 CTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTA 183673 ||| ||| || |||| | | |||||||| ||| |||||||||||| || || | Sbjct 7403 TTGTTTTCTTGATCTACCTAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAA 7462 Query 183674 TCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 183733 || | | || || |||| |||| |||| ||||| || |||||||||||||| ||||| | Sbjct 7463 TCTCTAGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATC 7522 Query 183734 CCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACG 183793 | || | |||| | ||||| |||||||| |||| || ||||| | ||||| ||||| | Sbjct 7523 CATTTCGCATGTTAGGTGTAGCTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCATG 7582 Query 183794 GTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACTGAGTCTGAGTCACAGAACTAT 183852 |||| |||| |||| || | | | || | |||||||| | ||| || || | Sbjct 7583 GTTCCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAG 7641 Query 183853 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTT 183912 ||||||| ||| | ||||| ||||| || || || ||||| ||||||||||| || || Sbjct 7642 GGTTACAGATTCAGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTC 7701 Query 183913 GGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTT 183972 || || ||||||| || |||||| || ||||| ||||||||| || ||||||| | Sbjct 7702 GGCCGATTGATCTTTCAATATGCTAGTTTCAACAACTCTCGTTCT-TTACCTTCTTCTTA 7760 Query 183973 GCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTT 184032 ||||||||||| || || || || |||||||||||| | ||| |||| |||||||| || Sbjct 7761 GCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTC 7820 Query 184033 AACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAAC 184092 ||| | |||||||| || |||||||| || | ||||| ||||||||||||| | | Sbjct 7821 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCAT 7880 Query 184093 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAAT 184152 || ||||| || | | |||| |||| |||| |||||||| ||||| || |||||| Sbjct 7881 ACTTGGGCTGATATCATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAAT 7940 Query 184153 GCTCACAACTTCCCTCTCGACCTTGCTGCT 184182 ||||| |||||||||| ||||| || ||| Sbjct 7941 GCTCATAACTTCCCTCAAGACCTAGCCGCT 7970 >seq1658 Length=355568 Score = 542 bits (600), Expect = 4e-149 Identities = 716/990 (72%), Gaps = 16/990 (2%) Strand=Plus/Minus Query 183205 TGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACTGATGATTCCA 183264 ||||| || |||||| | ||||| || ||| | || |||||||| ||||||| || Sbjct 187915 TGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCT 187856 Query 183265 ACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTCCTCCTGTGGA 183323 || | ||| | ||||| |||| || || | |||||| | |||||||||| | || Sbjct 187855 ACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGA 187797 Query 183324 CATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAACATCATCTC 183383 || || || || || ||||| ||| | ||||| || | || ||||| || || || || Sbjct 187796 TATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTC 187737 Query 183384 TGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGAC---TTCACTTCTATCCCATCTGGGA 183440 ||| | || ||||| ||| ||| ||| | | ||||| ||||| || || || Sbjct 187736 GGGTACCATTATTCCTACTTTT---GCAGTTGTAGGGTTGCACTTTTATCCAATATGAGA 187680 Query 183441 AGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGTCTTCCA 183500 ||| || | | ||||||||| | || |||||||||||||| |||| | || | || Sbjct 187679 AGCGGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACA 187620 Query 183501 CTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCGTCTCGG 183560 ||| | |||| || || || |||||||||||||||||| | || |||||| || Sbjct 187619 CTTTTTACTTGGTGTAGCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGG 187560 Query 183561 TATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTCTT 183620 |||||| |||||||| |||||| ||| || | |||| || || || ||||| || Sbjct 187559 TATGCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTTT 187500 Query 183621 CCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTATCAGTGG 183680 | || |||| || | |||||||| ||| |||||||||||| || | ||| ||| Sbjct 187499 CTTGATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGG 187440 Query 183681 CACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCA 183740 || || |||| |||| |||| ||| | || |||||||||||||| ||||| || || || Sbjct 187439 TACTTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCA 187380 Query 183741 CATGCTGGGTGTCGCTGGTGTC--------TTCGGTGGTTCTCTGTTCAGTGCAATGCAC 183792 |||| | ||||| ||||||| | ||||| | ||||| | ||||| ||||| Sbjct 187379 CATGTTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCTTTCTAGTGCTATGCAT 187320 Query 183793 GGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAGTCACAGAACTAT 183852 ||||| |||| | ||| || || | |||||||| || ||| || || | Sbjct 187319 GGTTCCTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAG 187260 Query 183853 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTT 183912 ||||||| ||||| ||||| ||||| || || || ||||| ||||||||||| || || Sbjct 187259 GGTTACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTC 187200 Query 183913 GGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTT 183972 | || ||||||| || ||| || || ||| | ||||||||| | ||||||||| | Sbjct 187199 GCCCGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTTA 187140 Query 183973 GCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTT 184032 ||||||||||| || || || || ||||||| |||| | ||| |||| |||||||| || Sbjct 187139 GCTGCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTTC 187080 Query 184033 AACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAAC 184092 ||| | |||||||| || |||||||| || | ||||| ||||||||||||| | || Sbjct 187079 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 187020 Query 184093 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAAT 184152 || ||||| || | | ||||||||| ||||| |||||||| ||||| || |||||| Sbjct 187019 ACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 186960 Query 184153 GCTCACAACTTCCCTCTCGACCTTGCTGCT 184182 ||||| ||||||||||| ||||| || ||| Sbjct 186959 GCTCATAACTTCCCTCTAGACCTAGCCGCT 186930 >seq2002 Length=1023113 Score = 435 bits (482), Expect = 4e-117 Identities = 699/1003 (70%), Gaps = 1/1003 (0%) Strand=Plus/Plus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 ||||||||||| | | ||||| || || ||||| || |||||||| || | || | Sbjct 167438 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGGCTATTGCTCT 167497 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 ||| ||||||| | || | || || ||| |||| || ||||| ||||| || | Sbjct 167498 TTCGTG-TGCTTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 167556 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAG 186150 |||||||||| || ||||| |||||| | || ||| ||||| | || || ||| Sbjct 167557 GGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGTTGCAATTTCTTAACCGCGACAG 167616 Query 186151 TGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 186210 | || ||||||||| | | | | || ||| | | |||| |||||||| || | | Sbjct 167617 TTTCTACTCCTGCTAATAGTTTAGCCCACTCTTTATTGTTACTGTGGGGTCCCGAAGCAC 167676 Query 186211 AAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 186270 ||||||| | | || |||| ||| | || || || |||| |||||| || || || | Sbjct 167677 AAGGAGACTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCATG 167736 Query 186271 GAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCGTCTCGTAGGTA 186330 | || || || || |||||||| ||| | || || || || | ||| ||| Sbjct 167737 GTGCTTTCGCACTTATAGGTTTTATGTTACGTCAATTCGAGCTTGCTCGATCCGTTCAAT 167796 Query 186331 TCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTCC 186390 | || || || ||||| || || || |||||||| || ||||| |||||| |||||||| Sbjct 167797 TGCGCCCTTATAATGCAATCGCATTATCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCC 167856 Query 186391 TCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAA 186450 | || || || || || ||||| |||||||| || || ||||| | ||||| | Sbjct 167857 TAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTATAGCAGCTA 167916 Query 186451 TCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACA 186510 | ||| ||||| | | || | ||||| || || || ||||| |||||||||| || | Sbjct 167917 TATTTCGATTCATTCTCTTTTTTCAAGGGTTTCATAATTGGACACTGAATCCATTTCATA 167976 Query 186511 TGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTG 186570 ||||||| || || ||| | | || | ||||| || | || || ||||| | ||| | Sbjct 167977 TGATGGGAGTTGCCGGTGTATTGGGCGCCGCTCTACTATGCGCTATTCATGGCGCTACCG 168036 Query 186571 TAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACGA 186630 ||||||||| | | | |||||| || || ||||| |||||| || || | | | Sbjct 168037 TAGAAAATAATTTATTTGAAGACGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAA 168096 Query 186631 CGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTCG 186690 | |||| |||||||| ||||| |||||||| || ||| | || ||||| || || || | Sbjct 168097 CCCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTTTG 168156 Query 186691 GAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATGG 186750 | |||| ||| |||||| ||||| | |||||||| ||| | ||||| || || | | Sbjct 168157 GCGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCG 168216 Query 186751 GTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGACT 186810 || | |||| | | |||| | | ||| | ||| | ||||| ||||| ||||||| Sbjct 168217 GTTTATGGATGAGTGCTCTTGGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATGACT 168276 Query 186811 TTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGA 186870 | | ||||| | | ||||| || |||||||| || || || ||||| ||||| | Sbjct 168277 TCATTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAA 168336 Query 186871 ATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGAAA 186930 |||| || || || |||||| | ||||| |||||||| | ||||| || ||||||| Sbjct 168337 ATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAA 168396 Query 186931 ACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 || || |||| ||||| || || | || | || |||||||| Sbjct 168397 ACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 168439 >seq2646 Length=128401 Score = 89.7 bits (98), Expect = 6e-13 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 170958 CCTGACGGCACCGAAAATACTTTTGAATGTGCTGAAGATCAATATATTCTTGATGCTGCT 171017 || || || || ||| || ||||| ||| || ||| || || || ||||| ||| Sbjct 23967 CCAGATGGAACAGAACATGAATTTGAGGCTGCGGATGATACTTACATCCTCGATGCAGCT 24026 Query 171018 GAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGTGCTTGTTCGACCTGTGCT 171077 ||||| ||| |||| ||| || || || | || ||||| || || ||||||||| Sbjct 24027 GAAGACAAAGGGGTTGACTTGCCTTACTCATGCAGGGCAGGTGCCTGCTCAACCTGTGCT 24086 Query 171078 GGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCTTTCCTTGATGATGATCAG 171137 || | ||| ||||| | |||||||| |||||| ||| ||||||||||| |||| Sbjct 24087 GGTCAGCTTGTAAGTGGAACAGTTGATCAGTCCGATGGATCCTTCCTTGATGACAATCAA 24146 Query 171138 ATTGAATCAGGTTTCATTCTGACCTGCGTCTCATATCCTACAAGTGATTGTGTAATC 171194 || || ||||| | || || || || || || || | || ||||||||| Sbjct 24147 ATGGAGAAAGGTTATTTGCTCACTTGTGTTTCTTACCCGCGATCAGACTGTGTAATC 24203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622046971273560