Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq1325 531 6e-146 seq2002 518 4e-142 seq1658 504 8e-138 >seq1325 Length=385796 Score = 531 bits (588), Expect = 6e-146 Identities = 721/993 (73%), Gaps = 13/993 (1%) Strand=Plus/Plus Query 163928 TTCTGTAACTGGGTAACTTCAAC-CGACAATC-GTTTGTATGTCGGTTGGTTCGGCGTCC 163985 |||||||||| | |||| |||| | | || | || | ||| | || ||||| || || Sbjct 6985 TTCTGTAACTTGATAAC--CAACACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTT 7042 Query 163986 TGATGATTCCCTGCCTGCTGGCAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCT 164044 ||||||| || | | || | || ||| | ||| || || | |||||||| | |||| Sbjct 7043 TGATGATCCCAACCTTATTGACTGCAACTTC-TGTATTTATTTTAGCCTTCATTGCTGCT 7101 Query 164045 CCTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAAC 164104 |||| || || || ||||| || || |||| || | || || || | || |||||| Sbjct 7102 CCTCTAGTAGATATTGATGGTATTCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAAC 7161 Query 164105 AACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCC 164164 || || || || ||||| |||| ||| ||||| ||||| || ||||||| || || Sbjct 7162 AATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCA 7221 Query 164165 ATCTGGGAAGCAGCAAGTCTG--GACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCG 164222 || ||||||||||| ||| | || || ||| | |||||||| ||||||| |||| Sbjct 7222 ATATGGGAAGCAGC--GTCGGTTGATGAGTGGTTATACAACGGAGGTCCTTATGAACTAA 7279 Query 164223 TTGTGTTCCACTTCCTGATTGGCATCT-ATGCTTACATGGGTCGTGAGTGGGAACTTTCT 164281 |||| | |||| | |||| | ||| ||| ||||||||||||||||||||| | Sbjct 7280 TTGTTCTAAACTTTTTACTTGGTGTAGCATG-TTATATGGGTCGTGAGTGGGAACTTAGT 7338 Query 164282 TACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCG 164341 | |||||| |||||||| ||||||||| || ||||| || ||||| || || || || Sbjct 7339 TTCCGTCTGGGTATGCGCCCTTGGATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCT 7398 Query 164342 AGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTG 164401 | || || ||| || |||| | | |||||||| || ||||||| |||||||| Sbjct 7399 ACTGTTGTTTTCTTGATCTACCTAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTA 7458 Query 164402 GGCATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATG 164461 || |||||| | || ||||||| ||| | || ||||||||||||||||||||||| ||| Sbjct 7459 GGAATCTCTAGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATG 7518 Query 164462 CACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATG 164521 || || || | ||| | || ||||| |||||||| | || ||||| | ||||| ||| Sbjct 7519 CATCCATTTCGCATGTTAGGTGTAGCTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATG 7578 Query 164522 CACGGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAAC 164581 || ||||| |||| |||||| || | | || ||||| ||||||| || || Sbjct 7579 CATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACATAAAATGAATCTGCTAAT 7638 Query 164582 TATGGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTAC 164641 | ||||||| || | || || |||||||| || || || || || ||||| ||||| Sbjct 7639 GAGGGTTACAGATTCAGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTAT 7698 Query 164642 TTTGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTC 164701 || || || |||| || ||||| ||| ||||||||||| ||||| | | ||||||| Sbjct 7699 TTCGGCCGATTGATCTTTCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC-CTTCTTC 7757 Query 164702 CTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCA 164761 | || || |||||||| || ||||| |||||||||||| | || |||| || ||||| Sbjct 7758 TTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCC 7817 Query 164762 TTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTC 164821 |||||| | || |||||||| |||||||| || | | ||| |||| |||||||| | Sbjct 7818 TTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATT 7877 Query 164822 AACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGT 164881 | || ||||| || | | |||| |||| | || |||||||| ||||| || ||| Sbjct 7878 CATACTTGGGCTGATATCATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACGT 7937 Query 164882 AATGCTCACAACTTCCCTCTCGACCTTGCTGCT 164914 |||||||| |||||||||| ||||| || ||| Sbjct 7938 AATGCTCATAACTTCCCTCAAGACCTAGCCGCT 7970 >seq2002 Length=1023113 Score = 518 bits (574), Expect = 4e-142 Identities = 717/996 (72%), Gaps = 13/996 (1%) Strand=Plus/Plus Query 165180 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 165239 || ||||||||||||||||| || |||||||| || | || |||| ||||||| | Sbjct 167455 AGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGGCTATTGCTCTTTCGTG-TGCTTATTTC 167513 Query 165240 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 165299 || | || |||||| |||| || || || || || || |||||||| || ||| | Sbjct 167514 GCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTG 167573 Query 165300 GCGAGTTCCTATCTTGAGGGT-GCAAACTTTCTTA-CTGCGGCAGTTTCTACTCCAGCAG 165357 || ||||| ||| | || ||| |||| ||||||| | ||| ||||||||||||| || Sbjct 167574 GCCAGTTCTTATTTGGAAGGTTGCAA--TTTCTTAACCGCGACAGTTTCTACTCCTGCTA 167631 Query 165358 ACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCC 165417 | | | | || ||| | || | || |||||||| || | ||||| ||||| | | Sbjct 167632 ATAGTTTAGCCCACTCTTTATTGTTACTGTGGGGTCCCGAAGCACAAGGAGACTTTACTC 167691 Query 165418 GCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTA 165477 | ||||| ||| | || || || ||||||||||| || || || || || || ||||||| Sbjct 167692 GTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCATGGTGCTTTCGCACTTA 167751 Query 165478 TAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATCGGT---ATT-CGTCCTTAC 165533 ||||||| ||| | || || || || || || ||| || || ||| || ||||| Sbjct 167752 TAGGTTTTATGTTACGTCAATTCGAGCTTGCTCGA----TCCGTTCAATTGCGCCCTTAT 167807 Query 165534 AATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCT 165593 ||||| || || || |||||||| |||||||| || ||| ||| || || || ||||| Sbjct 167808 AATGCAATCGCATTATCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTAATTTATCCA 167867 Query 165594 CTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTC 165653 || || || || |||||||| ||||| || || | ||||| || || |||||| Sbjct 167868 CTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTATAGCAGCTATATTTCGATTC 167927 Query 165654 CTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTA 165713 | ||||| | |||||||| ||||| ||||| |||||||| ||||| |||||||| || Sbjct 167928 ATTCTCTTTTTTCAAGGGTTTCATAATTGGACACTGAATCCATTTCATATGATGGGAGTT 167987 Query 165714 GCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACT 165773 || ||| | || |||| || | || | || |||||||| | ||| ||||| |||| | Sbjct 167988 GCCGGTGTATTGGGCGCCGCTCTACTATGCGCTATTCATGGCGCTACCGTAGAAAATAAT 168047 Query 165774 TTGTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAG 165833 || | |||||| ||||| ||||| || ||| || ||| | || || | || Sbjct 168048 TTATTTGAAGACGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAACCCAAGCCGAA 168107 Query 165834 GAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTC 165893 ||||||||||| |||||||| |||||||| || ||||| || |||||||| ||||||| Sbjct 168108 GAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTTTGGCGTTGCTTTT 168167 Query 165894 AGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACA 165953 |||||| ||||| | || ||||||||| | ||||| || || | || | |||| Sbjct 168168 TCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATG 168227 Query 165954 AGTTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAG 166013 ||| || |||| | | ||| | || | || || ||||| ||||| || | || ||| Sbjct 168228 AGTGCTCTTGGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATGACTTCATTTCCCAG 168287 Query 166014 GAGATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTT 166073 || || | || || || ||||| || |||||||| ||||| || ||||| || ||| | Sbjct 168288 GAAATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTA 168347 Query 166074 AATGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTC 166133 || ||||| | ||||| ||| |||| || ||| || |||||||| ||| || | ||| Sbjct 168348 AACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTC 168407 Query 166134 CCTGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 ||||| || || | || | || ||||| |||||| Sbjct 168408 CCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 168443 >seq1658 Length=355568 Score = 504 bits (558), Expect = 8e-138 Identities = 710/990 (72%), Gaps = 14/990 (1%) Strand=Plus/Minus Query 163936 CTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTGATGATTCC 163995 |||| ||||| || || || ||| | ||| | || ||||| || || ||||||| || Sbjct 187916 CTGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGAT-CC 187858 Query 163996 CTGCCTGCTGG-CAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTCCTCCTGTG 164053 || ||| | | | || ||| | ||| || || || |||||||| | |||||||| | Sbjct 187857 CTACCTTATTGACTGCAACTTC-TGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTA 187799 Query 164054 GACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATC 164113 || || ||||| || || ||||| || | || || || | || ||||| || || || Sbjct 187798 GATATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATT 187739 Query 164114 TCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAA 164173 || ||| | |||| ||| ||| | | | | || ||||||| || || || || ||| Sbjct 187738 TCGGGTACCATTATTCCTACTTTTGCAGTTGTAGGGTTGCACTTTTATCCAATATGAGAA 187679 Query 164174 GCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCAC 164233 || || | || || ||| | |||||||||||||||| |||| |||| | ||| Sbjct 187678 GCGGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACAC 187619 Query 164234 TTCCTGATTGGCATCT-ATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGG 164292 || | |||| | ||| ||| ||||||||||||||||||||| || |||||| || Sbjct 187618 TTTTTACTTGGTGTAGCATG-TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGG 187560 Query 164293 TATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTT 164352 |||||| ||||||||| || ||||| | |||| | || || || | ||| || || Sbjct 187559 TATGCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTTT 187500 Query 164353 CCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGG 164412 | || |||| || | |||||||| || | ||||| |||||||| | |||||||| Sbjct 187499 CTTGATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGG 187440 Query 164413 AACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCA 164472 || ||||||| ||| | || ||| ||||||||||||||||||| ||||| || || || Sbjct 187439 TACTTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCA 187380 Query 164473 TATGCTCGGCGTAGCAGGTG--------TGTTTGGCGGTTCTCTGTTCAGTGCAATGCAC 164524 ||| | || ||||| |||| | || ||| | ||||| | ||||| ||||| Sbjct 187379 CATGTTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCTTTCTAGTGCTATGCAT 187320 Query 164525 GGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTAT 164584 ||||| |||| | |||| || || | || ||||| |||||||| || || | Sbjct 187319 GGTTCCTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAG 187260 Query 164585 GGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTT 164644 ||||||| || || || || |||||||| || || || || || ||||| ||||| || Sbjct 187259 GGTTACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTC 187200 Query 164645 GGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTC 164704 | || |||| || ||||| || |||||| |||| ||||| | ||||||||| | Sbjct 187199 GCCCGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTTA 187140 Query 164705 GCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTC 164764 || || |||||||| || ||||| ||||||| |||| | || |||| || ||||| ||| Sbjct 187139 GCTGCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTTC 187080 Query 164765 AACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAAC 164824 ||| | || |||||||| |||||||| || | | ||| |||| |||||||| | || Sbjct 187079 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 187020 Query 164825 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAAT 164884 || ||||| || | | ||||||||| || || |||||||| ||||| || |||||| Sbjct 187019 ACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 186960 Query 164885 GCTCACAACTTCCCTCTCGACCTTGCTGCT 164914 ||||| ||||||||||| ||||| || ||| Sbjct 186959 GCTCATAACTTCCCTCTAGACCTAGCCGCT 186930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557633397341160