Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq1325 538 4e-148 seq1658 491 5e-134 seq2002 473 1e-128 >seq1325 Length=385796 Score = 538 bits (596), Expect = 4e-148 Identities = 719/990 (73%), Gaps = 7/990 (1%) Strand=Plus/Plus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 |||||||||| | ||||| ||| || || |||| ||| | || ||||| ||||| || Sbjct 6985 TTCTGTAACTTGATAACCAACACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTG 7044 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 |||||||| || | | |||| || ||||| || || | || ||| | |||||||| Sbjct 7045 ATGATCCCAACCTTATTGACTGCAACT-TCTGTATTTATTTTAGCCTTCATTGCTGCTCC 7103 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 || || || || || || || ||||||| || | || || || | || || ||||| Sbjct 7104 TCTAGTAGATATTGATGGTATTCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAA 7163 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 || ||||| ||||| || ||||| ||||| ||||| || | ||||| ||||| || Sbjct 7164 TATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAAT 7223 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTAT 177896 ||||||||||| || | ||||||||| | ||||| || ||||||| |||| || | Sbjct 7224 ATGGGAAGCAGCGTCGGTTGATGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTGT 7283 Query 177897 CTTCCACTTCCTGATCGGTATCT-ATGCATACATGGGTCGTGAGTGGGAACTTTCTTACC 177955 | |||| | | ||| | ||| || ||||||||||||||||||||| || || Sbjct 7284 TCTAAACTTTTTACTTGGTGTAGCATGT-TATATGGGTCGTGAGTGGGAACTTAGTTTCC 7342 Query 177956 GCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTG 178015 | || |||||||| || ||||| ||| ||||| || ||||| || || || || ||| Sbjct 7343 GTCTGGGTATGCGCCCTTGGATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTG 7402 Query 178016 CTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTA 178075 ||| ||| | | || | | |||||||| || ||||| | |||||| || || | Sbjct 7403 TTGTTTTCTTGATCTACCTAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAA 7462 Query 178076 TCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 178135 || | | || ||||||| ||| |||| ||||| || |||||||||||||| ||||| | Sbjct 7463 TCTCTAGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATC 7522 Query 178136 CCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACG 178195 | || | |||||| || || |||||||| || | || ||||| | ||||| ||||| | Sbjct 7523 CATTTCGCATGTTAGGTGTAGCTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCATG 7582 Query 178196 GTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACCGAGAACGAAAGTCAGAACTAT 178254 |||| |||| |||| || | | | || | |||||||| | || ||| | || | Sbjct 7583 GTTCCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAG 7641 Query 178255 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTC 178314 ||||||| ||| | ||||| ||||| || || || || || |||||||||||||| ||| Sbjct 7642 GGTTACAGATTCAGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTC 7701 Query 178315 GGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTC 178374 || || ||||||| ||||| || ||||||||||| ||||| | | ||||||| | Sbjct 7702 GGCCGATTGATCTTTCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC-CTTCTTCTTA 7760 Query 178375 GCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTC 178434 || || |||||||| || ||||| ||||| |||||| | ||| |||| || ||||| ||| Sbjct 7761 GCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTC 7820 Query 178435 AACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAAC 178494 ||| | || |||||||| |||||||| || | | |||||||| || || | | Sbjct 7821 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCAT 7880 Query 178495 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAAT 178554 || ||||| || | | |||| |||| ||||||||||||| ||||| || |||||| Sbjct 7881 ACTTGGGCTGATATCATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAAT 7940 Query 178555 GCTCACAACTTCCCTCTTGACCTCGCTGCT 178584 ||||| |||||||||| ||||| || ||| Sbjct 7941 GCTCATAACTTCCCTCAAGACCTAGCCGCT 7970 >seq1658 Length=355568 Score = 491 bits (544), Expect = 5e-134 Identities = 705/989 (71%), Gaps = 12/989 (1%) Strand=Plus/Minus Query 177606 CTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCC 177665 |||| |||| ||| | || ||||| ||| | || ||||| ||||| |||||||||| Sbjct 187916 CTGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCC 187857 Query 177666 TACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCCTCCTGTGG 177724 ||| | | |||| || ||||| || || | || ||| | |||||||||| | | Sbjct 187856 TACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAG 187798 Query 177725 ACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAACATCATTT 177784 | || || || || |||||||| || | || || || | || || || || || |||| Sbjct 187797 ATATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTT 187738 Query 177785 CTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCATCTGGGAAG 177844 | ||| | || ||||| ||| | | | | || | ||||| ||||| || || |||| Sbjct 187737 CGGGTACCATTATTCCTACTTTTGCAGTTGTAGGGTTGCACTTTTATCCAATATGAGAAG 187678 Query 177845 CAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTATCTTCCACT 177904 | || | | ||||||||| | ||||| |||||||||| |||| || | | |||| Sbjct 187677 CGGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACT 187618 Query 177905 TCCTGATCGGTATCT-ATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGT 177963 | | | ||| | ||| || ||||||||||||||||||||| || ||| |||||| Sbjct 187617 TTTTACTTGGTGTAGCATGT-TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGT 187559 Query 177964 ATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTC 178023 ||||| || ||||| ||| ||||| | |||| | || || || ||||||| ||| Sbjct 187558 ATGCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTTTC 187499 Query 178024 CTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGC 178083 | | || || | |||||||| || | ||| | |||||| || | ||| ||| Sbjct 187498 TTGATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGGT 187439 Query 178084 ACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCAC 178143 || ||||||| ||| |||| ||| | || |||||||||||||| ||||| || || ||| Sbjct 187438 ACTTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCAC 187379 Query 178144 ATGTTGGGCGTCGCTGGTGTC--------TTTGGTGGTTCTCTGTTCAGTGCGATGCACG 178195 ||||| || || ||||||| | || || | ||||| | ||||| ||||| | Sbjct 187378 ATGTTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCTTTCTAGTGCTATGCATG 187319 Query 178196 GTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCAGAACTATG 178255 |||| |||| | ||| || || | |||||||| || || ||| | || | | Sbjct 187318 GTTCCTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAGG 187259 Query 178256 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCG 178315 |||||| ||||| ||||| ||||| || || || || || |||||||||||||| |||| Sbjct 187258 GTTACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCG 187199 Query 178316 GTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCG 178375 || ||||||| ||||| | |||||| |||| ||||| | ||||||||| | | Sbjct 187198 CCCGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTTAG 187139 Query 178376 CAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCA 178435 | || |||||||| || ||||| ||||| | |||| | ||| |||| || ||||| |||| Sbjct 187138 CTGCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTTCA 187079 Query 178436 ACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACA 178495 || | || |||||||| |||||||| || | | |||||||| || || | || | Sbjct 187078 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 187019 Query 178496 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATG 178555 | ||||| || | | ||||||||| |||||||||||||| ||||| || ||||||| Sbjct 187018 CTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 186959 Query 178556 CTCACAACTTCCCTCTTGACCTCGCTGCT 178584 |||| ||||||||||| ||||| || ||| Sbjct 186958 CTCATAACTTCCCTCTAGACCTAGCCGCT 186930 >seq2002 Length=1023113 Score = 473 bits (524), Expect = 1e-128 Identities = 718/1015 (71%), Gaps = 5/1015 (0%) Strand=Plus/Plus Query 178839 TTTGAT-GTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTCAGG 178897 |||||| ||| | ||||||||| | | | || || ||||||||||| |||||||| || Sbjct 167428 TTTGATAGTA-TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGG 167486 Query 178898 TCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATT 178957 || | || || | | |||||| | || | || |||||| | || || ||||| || Sbjct 167487 GCTATTGCTCTTTCGTG-TGCTTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTT 167545 Query 178958 CGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCT 179017 || || || |||||||| || || | || ||| ||| | || || || |||||| | Sbjct 167546 TGTAACTTCATGGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGTTGCAATTTCTT 167605 Query 179018 TACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGG 179077 || || | || || ||||||||| | | | | || || || | | || ||||| Sbjct 167606 AACCGCGACAGTTTCTACTCCTGCTAATAGTTTAGCCCACTCTTTATTGTTACTGTGGGG 167665 Query 179078 TCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGT 179137 ||| ||||| || ||||| || || ||| ||| | || || || ||| ||||||| Sbjct 167666 TCCCGAAGCACAAGGAGACTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGT 167725 Query 179138 GGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACG 179197 || || || ||||| ||||| || |||||||| ||| | || || || || | || || Sbjct 167726 TGCTCTTCATGGTGCTTTCGCACTTATAGGTTTTATGTTACGTCAATTCGAGCTTGCTCG 167785 Query 179198 -TCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTG 179256 || || | | || ||||| ||||||||||| || ||||||||||||||||| |||| Sbjct 167786 ATCCGTTCAAT-TGCGCCCTTATAATGCAATCGCATTATCTGGTCCAATTGCTGTTTTTG 167844 Query 179257 TGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTG 179316 | ||||| || || || ||||| || || ||||| ||||||||||| || |||| Sbjct 167845 TTTCTGTATTCCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTG 167904 Query 179317 GAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCA 179376 | | ||||| || || || ||| | ||||| | || || || || || ||||| || | Sbjct 167905 GTATAGCAGCTATATTTCGATTCATTCTCTTTTTTCAAGGGTTTCATAATTGGACACTGA 167964 Query 179377 ACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTC 179436 | || || || |||||||| || || ||| | |||||| || | || || || |||| Sbjct 167965 ATCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCCGCTCTACTATGCGCTATTC 168024 Query 179437 ATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGG 179496 |||| ||||| ||||| || | | ||||||||| |||| ||||||||||| || Sbjct 168025 ATGGCGCTACCGTAGAAAATAATTTATTTGAAGACGGTGATGGGGCAAATACATTCCGGG 168084 Query 179497 CATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGT 179556 | || | || || |||| || || || ||||| ||||| || || ||||| || |||| Sbjct 168085 CTTTTAACCCAACCCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGT 168144 Query 179557 CTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTG 179616 | || || ||||| | || || |||||| ||||| |||||||||||||||| |||| Sbjct 168145 CCCAAATTTTTGGCGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTG 168204 Query 179617 TTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTTA 179676 | || || | ||| | |||| | |||| | | ||| | || | ||||| Sbjct 168205 TACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTATGGCTTTGAACCTAC 168264 Query 179677 GAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGT 179736 | || |||||||| |||| || || ||| | || || || |||||||| || || || | Sbjct 168265 GTGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAAACTT 168324 Query 179737 TCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATC 179796 |||| ||||| || || || || || |||||| | |||||||||||||| | |||| Sbjct 168325 TCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATC 168384 Query 179797 AACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 | || ||||||||| || |||| ||||| || || | || | || |||||||| Sbjct 168385 AGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 168439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596284741580080