Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq1325 520 1e-142 seq2002 499 4e-136 seq1658 468 6e-127 >seq1325 Length=385796 Score = 520 bits (576), Expect = 1e-142 Identities = 713/990 (72%), Gaps = 7/990 (1%) Strand=Plus/Plus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 |||||||||| | ||||| |||| | ||| |||| ||| | || ||||| || || || Sbjct 6985 TTCTGTAACTTGATAACCAACACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTG 7044 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| | | || | ||||| || || || | |||||||| | |||||| Sbjct 7045 ATGATCCCAACCTTATTGACTGCAACTTCTGTATTTATTTTAGCCTTCATTGCTGCTCCT 7104 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 | || || || || || || || |||| ||| | || ||||| | || || ||||| Sbjct 7105 CTAGTAGATATTGATGGTATTCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAAT 7164 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591 || || || ||||| || | || |||| || || || | ||||| ||||| || Sbjct 7165 ATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATA 7224 Query 169592 TGGGAAGCAGCAAGTC--TCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTG 169649 ||||||||||| ||| | ||||| ||||| |||||||| ||||||| |||| ||| Sbjct 7225 TGGGAAGCAGC--GTCGGTTGATGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTG 7282 Query 169650 TCTTCCACTTCCTCATCGGCATCT-ATGCTTACATGGGTCGTGAGTGGGAATTGTCCTAT 169708 | | |||| | | || | ||| ||| |||||||||||||||||| | | Sbjct 7283 TTCTAAACTTTTTACTTGGTGTAGCATG-TTATATGGGTCGTGAGTGGGAACTTAGTTTC 7341 Query 169709 CGTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCC 169768 ||||||||||||||||||||||| |||||| || || ||||| ||||| || || | Sbjct 7342 CGTCTGGGTATGCGCCCTTGGATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACT 7401 Query 169769 GCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGT 169828 | ||||||| || |||||| |||| ||||| || ||||| | ||||||||| || Sbjct 7402 GTTGTTTTCTTGATCTACCTAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGA 7461 Query 169829 ATCTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCAC 169888 ||||| | || || |||| ||| | || ||||| ||||||||||||||||| ||||| Sbjct 7462 ATCTCTAGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAT 7521 Query 169889 CCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCAC 169948 || || | |||| | ||||| || || ||||| | || ||||| | ||| || ||||| Sbjct 7522 CCATTTCGCATGTTAGGTGTAGCTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCAT 7581 Query 169949 GGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTAT 170008 ||| | | || ||||| ||| | || | |||||||| | || || || || | Sbjct 7582 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAG 7641 Query 170009 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTC 170068 ||||||| ||| | ||||| ||||| || || || || || || ||||| ||||| ||| Sbjct 7642 GGTTACAGATTCAGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTC 7701 Query 170069 GGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTC 170128 || || ||||||| ||||| ||| ||||||||||| ||||| | | ||||||| | Sbjct 7702 GGCCGATTGATCTTTCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC-CTTCTTCTTA 7760 Query 170129 GCAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTC 170188 || || |||||||| || || || ||||| || ||| | ||| | || ||||| ||| Sbjct 7761 GCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTC 7820 Query 170189 AACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAAC 170248 ||| | || |||||||| |||||||| || | | ||| |||| |||||||| | | Sbjct 7821 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCAT 7880 Query 170249 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAAT 170308 || ||||| || | | |||| |||| |||| |||||||| ||||| || |||||| Sbjct 7881 ACTTGGGCTGATATCATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAAT 7940 Query 170309 GCTCACAACTTCCCTCTCGACCTCGCTGCT 170338 ||||| |||||||||| ||||| || ||| Sbjct 7941 GCTCATAACTTCCCTCAAGACCTAGCCGCT 7970 >seq2002 Length=1023113 Score = 499 bits (552), Expect = 4e-136 Identities = 716/1008 (71%), Gaps = 1/1008 (0%) Strand=Plus/Plus Query 170605 TGGATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTCTGGACTTCTTCTTT 170664 ||||||||||| | | || || || || ||||| || |||||||| || | || | Sbjct 167438 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGGCTATTGCTCT 167497 Query 170665 TTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAAGTT 170724 ||| ||||||| | || | || || ||| |||| || || || ||||| || | Sbjct 167498 TTCGTG-TGCTTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 167556 Query 170725 GGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAATTTCCTTACAGCGGCTG 170784 |||| ||||| ||| | || ||||| || | |||||| |||||| | || ||| | | Sbjct 167557 GGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGTTGCAATTTCTTAACCGCGACAG 167616 Query 170785 TGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 170844 | || || |||||| || | | | || ||| | | |||| |||||||| || | | Sbjct 167617 TTTCTACTCCTGCTAATAGTTTAGCCCACTCTTTATTGTTACTGTGGGGTCCCGAAGCAC 167676 Query 170845 AGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 170904 | || || || || |||| ||| | || || || |||| |||||| || || || | Sbjct 167677 AAGGAGACTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCATG 167736 Query 170905 GAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCGTCTCGTAGGGA 170964 | || || || || |||||||| ||| | || || || || | ||| ||| Sbjct 167737 GTGCTTTCGCACTTATAGGTTTTATGTTACGTCAATTCGAGCTTGCTCGATCCGTTCAAT 167796 Query 170965 TTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCC 171024 | | || || ||||||||||| || |||||||| || ||||| ||||| || |||| Sbjct 167797 TGCGCCCTTATAATGCAATCGCATTATCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCC 167856 Query 171025 TCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAA 171084 | || ||||| || || ||||| |||||||||| |||||| ||||| | ||||| | Sbjct 167857 TAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTATAGCAGCTA 167916 Query 171085 TCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATA 171144 | || || ||| | ||||| | ||||| || || || |||||||||||||||||||||| Sbjct 167917 TATTTCGATTCATTCTCTTTTTTCAAGGGTTTCATAATTGGACACTGAATCCATTTCATA 167976 Query 171145 TGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACAG 171204 ||||||| ||||| ||| | | |||| || | || | || |||||||| | ||| | Sbjct 167977 TGATGGGAGTTGCCGGTGTATTGGGCGCCGCTCTACTATGCGCTATTCATGGCGCTACCG 168036 Query 171205 TAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACACGA 171264 |||| |||| ||| | |||||| |||||| ||||| || || ||| ||| || | | Sbjct 168037 TAGAAAATAATTTATTTGAAGACGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAA 168096 Query 171265 CTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTTG 171324 | || | ||||| || ||||| |||||||| ||||| || || ||||| || ||||||| Sbjct 168097 CCCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTTTG 168156 Query 171325 GTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATGG 171384 | | || || |||||| ||||||| |||||||||||| | ||||| || || | | Sbjct 168157 GCGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCG 168216 Query 171385 GTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAGGGCTTATGATT 171444 || | ||| | ||| ||| || | | ||| | ||| | || || | || ||||| | Sbjct 168217 GTTTATGGATGAGTGCTCTTGGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATGACT 168276 Query 171445 TCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAGA 171504 || | ||||| || | ||||| |||||||| || || || || ||||| ||||| | Sbjct 168277 TCATTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAA 168336 Query 171505 ACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGAAA 171564 | || || || || |||||| ||||||| |||||||| | ||| || || ||||||| Sbjct 168337 ATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAA 168396 Query 171565 ACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTTTGAT 171612 || || | ||||| ||||| |||||||| ||||| || || |||| || Sbjct 168397 ACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAAT 168444 >seq1658 Length=355568 Score = 468 bits (518), Expect = 6e-127 Identities = 700/990 (71%), Gaps = 14/990 (1%) Strand=Plus/Minus Query 169360 CTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTGATGATCCC 169419 |||| |||| |||||| |||||||| ||| | || ||||| || || |||||||||| Sbjct 187916 CTGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCC 187857 Query 169420 CTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCCCCTGTGGA 169479 | | || | ||||| || || || || |||||||| | |||||| | | || Sbjct 187856 TACCTTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGA 187797 Query 169480 CATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAACATCATCTC 169539 || || || || || ||||| ||| | || ||||| | || || || || || || || Sbjct 187796 TATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTC 187737 Query 169540 TGGTGCTGTTGTGCC--CTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATCTGGGAA 169597 ||| | || | || || || || | | || | ||||| ||||| || || ||| Sbjct 187736 GGGTACCATTATTCCTACTTTTGCA--GTTGTAGGGTTGCACTTTTATCCAATATGAGAA 187679 Query 169598 GCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTCTTCCAC 169657 || || | ||||| ||||| |||||||||||||||| |||| |||| | ||| Sbjct 187678 GCGGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACAC 187619 Query 169658 TTCCTCATCGGCATCT-ATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGTCTGGG 169716 || | | || | ||| ||| |||||||||||||||||| | | ||||| || Sbjct 187618 TTTTTACTTGGTGTAGCATG-TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGG 187560 Query 169717 TATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTT 169776 ||||||||||||||| |||||| || | |||| |||| || || | |||||||| Sbjct 187559 TATGCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTTT 187500 Query 169777 CCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGG 169836 | || ||||||| |||| ||||| || | ||| | ||||||||| | ||||| || Sbjct 187499 CTTGATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGG 187440 Query 169837 AACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCA 169896 || || |||| ||| | || ||| | ||||||||||||||||| ||||| || || || Sbjct 187439 TACTTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCA 187380 Query 169897 CATGCTTGGTGTTGCGGGAG--------TGTTTGGTGGGTCTCTGTTTAGCGCGATGCAC 169948 |||| | ||||| || || | | || || | ||||| | ||| || ||||| Sbjct 187379 CATGTTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCTTTCTAGTGCTATGCAT 187320 Query 169949 GGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTAT 170008 ||| | | || | ||| ||| | | | |||||||| || || || || || | Sbjct 187319 GGTTCCTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAG 187260 Query 170009 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTC 170068 ||||||| ||||| ||||| ||||| || || || || || || ||||| ||||| ||| Sbjct 187259 GGTTACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTC 187200 Query 170069 GGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTC 170128 | || ||||||| ||||| || |||||| |||| ||||| | ||||||||| | Sbjct 187199 GCCCGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTTA 187140 Query 170129 GCAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTC 170188 || || |||||||| || || || ||||| | ||| | ||| | || ||||| ||| Sbjct 187139 GCTGCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTTC 187080 Query 170189 AACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAAC 170248 ||| | || |||||||| |||||||| || | | ||| |||| |||||||| | || Sbjct 187079 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 187020 Query 170249 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAAT 170308 || ||||| || | | ||||||||| ||||| |||||||| ||||| || |||||| Sbjct 187019 ACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 186960 Query 170309 GCTCACAACTTCCCTCTCGACCTCGCTGCT 170338 ||||| ||||||||||| ||||| || ||| Sbjct 186959 GCTCATAACTTCCCTCTAGACCTAGCCGCT 186930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592176096327760