Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2659 154 2e-32 >seq2659 Length=772501 Score = 154 bits (170), Expect = 2e-32 Identities = 463/705 (66%), Gaps = 20/705 (3%) Strand=Plus/Minus Query 23335 AAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATT 23394 || || || ||||| ||||| ||||| || |||| ||||| ||| |||| || || | Sbjct 21132 AACAGTCTGTCTGCAACAAACTCAATGTACTGACTCATCAGCTCACAGTTCATCCCAACC 21073 Query 23395 AGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATT 23454 || || || |||| ||||||| || ||| | || || || ||||| || | | Sbjct 21072 AGCTTCACCGGAAGCGCATCAGTTACGAACTCTCGCTCGATATCGACTGCATCCTTCACT 21013 Query 23455 ATT---TGAACAATAACTTCTTCACTAGGTGGATATT-TTAAATACT-TAAACAATAAAC 23509 || ||||| ||||| ||| | | || || | || | |||| | || Sbjct 21012 ATCCCCTGAAC-----CTTCTCCACACTCAGCTTCTTCTTCAGTAAGCTGTACAACAGAC 20958 Query 23510 ATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATC 23569 | ||||| |||||||| || ||||| || | |||| || || || || ||||| | Sbjct 20957 AAGCAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAAC 20898 Query 23570 CTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCC-GGAAAAGAAA 23628 | |||||||| || || ||||||| ||| || || | |||||| ||| ||| |||||| Sbjct 20897 CCGGCATTAACCCACGCTTTTTAAGCCAGAAGATGG-AGCAAAAACTCCCGGAGAAGAAA 20839 Query 23629 ATACCCTCAACAGCCGCAAAGGCCACAAGACGTGT-ACCAAATGTTGCATTATAATCAGA 23687 || || |||||| ||||| || | | || | | | |||||| | | | |||| Sbjct 20838 ATCCCTTCAACACAAGCAAAAGCAATTA-ACCTCTCAGCAAATGATTCTGCACCATCA-- 20782 Query 23688 AATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTT 23747 ||||| | ||||| ||||||| || ||||| || ||||||||||| Sbjct 20781 -ATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACG 20723 Query 23748 TAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACAT 23807 || ||| ||||| | | |||| | ||||| || || | || | | ||||| Sbjct 20722 AAAAAGATGGGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAGAAGAGAGTACAT 20663 Query 23808 TTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAA 23867 |||||| ||||| |||||||| || || || || ||||| ||| | |||||||| | Sbjct 20662 TTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAAC 20603 Query 23868 TTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGC 23927 || || || || | |||||| || | ||| ||| ||| || || ||| || || Sbjct 20602 CTGGACCTCTTTCATGAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTCAGATGCGGC 20543 Query 23928 AAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC---AGTTGATAATTTTTTCCA 23984 ||||| ||||| | | | || ||||| ||| || ||| | | ||| ||| Sbjct 20542 GAAGAAGGCAAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGACGGTTTCCCA 20483 Query 23985 ATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 | | || ||||| ||| | ||| ||||| || | ||||| || Sbjct 20482 GTGACGAACATCTTGTGAAAGATCGACTTCTTCGGCAGTCCAGAA 20438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521468359458200