Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2306 116 3e-21 seq1925 113 4e-20 seq758 113 4e-20 seq958 104 2e-17 seq2360 93.3 4e-14 >seq2306 Length=232912 Score = 116 bits (128), Expect = 3e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| ||| || ||| ||||||||| ||||| ||||| | Sbjct 177015 CCACCACGCAGACGGAGCACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCA 177074 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||||||| | || ||||||||||| |||||||| |||| | ||||||||| | |||| Sbjct 177075 AGGGTGCGCCCATCTTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGTTGGTCTGGGGGA 177134 Query 41756 ACGCTCTCCTTGTC 41769 | | ||||||||| Sbjct 177135 ATACCCTCCTTGTC 177148 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||| | ||||| ||| || ||| ||||||||| ||||| ||||||| | || || | Sbjct 176798 ACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGACC 176857 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 || ||||||||||| || ||||| |||| | ||| ||||| | ||||| | ||||| Sbjct 176858 ATCCTCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTT 176917 Query 41767 GTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTA 41825 |||| ||| | || | | ||| | | | |||||| ||| ||||||| || | Sbjct 176918 GTCC-TGAATCTTCGTCTTAACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAAAGTAA 176976 Query 41826 TCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || || || || ||||| |||||||||||||| Sbjct 176977 TGGTCTTCCCGGTAAGGGTCTTGACGAAAATCTGCAT 177013 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||| || || || || ||||||||| ||||| ||||| | |||||| || Sbjct 177252 AGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTTCGG 177311 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || ||||||||||| |||||||| ||||| | || ||||| | ||||| | |||| Sbjct 177312 CCATCCTCGAGCTGCTTTCCGGCGAAGATCAGCCTTTGCTGGTCTGGGGGAATTCCCTCC 177371 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||| | ||| |||| || | ||| | | | |||||| ||||| || | || Sbjct 177372 TTGT-CTTGAATTTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCACTTCGAGGGT 177430 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || || || || || |||||||| Sbjct 177431 GATTGTCTTTCCTGTTAGGGTTTTGACAAAGATCTGCAT 177469 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || ||||||||||||||| || || | Sbjct 176331 CCACCACGGAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCA 176390 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| ||| | || ||||||||||| || || || |||| | ||| ||||| | ||| Sbjct 176391 AGGGTACGCCCATCCTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGGGGG 176450 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTCC 41812 | | |||||||||| ||| | || || | || | | | ||| | ||| ||| Sbjct 176451 ATCCCCTCCTTGTCC-TGAATCTTAGCCTTTAC-ATTATCAATTGTATC-CGAGCTCTCA 176507 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || || || || |||| ||||| || ||||||||||| Sbjct 176508 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAAATCTGCAT 176557 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| || || || |||||| || || || || || | || || | | || || Sbjct 176576 CACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCCGCAAGAGTCCTTCCATCTTC 176635 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 |||||||||||||| || |||| | ||| ||||| | ||| | || ||||||||| | Sbjct 176636 CAGCTGCTTGCCGGCAAAAATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCC-T 176694 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGA---CTCCACCTCCACCGTTATCG 41828 || |||| || | || | | | ||||| ||| ||| ||||||| || || | Sbjct 176695 GAATTTTCGCCTTGACATTGTCGATGGTGTC---CGAACTCTCAACCTCCAGGGTAATGG 176751 Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || |||| ||||| |||||||||||||| Sbjct 176752 TCTTTCCGGTCAAGGTCTTGACGAAAATCTGCAT 176785 >seq1925 Length=318408 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || | || ||| | ||| ||||| || || ||||||||||||||| || || | Sbjct 245611 CCACCTCTTAAACGGAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGCA 245552 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| ||| |||| || |||||||| || || || ||||| | ||||||||| | |||| Sbjct 245551 AGGGTACGCCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAGTCTCTGTTGGTCTGGGGGA 245492 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||| | ||| |||| | || || | | | |||||| || || Sbjct 245491 ATGCCTTCCTTGT-CTTGAATTTTGGTTTTGACATTGTCAATGGTGTCGGAGCTTTCAAC 245433 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || || || || || || ||||| || |||||||||||| Sbjct 245432 CTCAAGGGTGATGGTCTTCCCAGTGAGGGTCTTAACAAAAATCTGCATG 245384 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || | || ||| | ||||| || || || |||||| |||||||| ||||| | Sbjct 245839 CCTCCTCTTAAACGAAGCACCAAGTGAAGTGTAGACTCCTTTTGAATGTTGTAGTCTGCA 245780 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| | | | || ||||||||||| || || || |||| | || || || | |||| Sbjct 245779 AGGGTCCTCCCATCCTCGAGCTGCTTCCCTGCAAAGATCAATCTTTGCTGATCTGGGGGA 245720 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | || |||||| ||| ||| | || || | || | | | ||||| ||| ||| Sbjct 245719 ATGCCCTCCTTATCC-TGAATCTTAGCCTTGACATTGTCGATGGTGTCTGAGCT---CTC 245664 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || ||||| || |||| ||||| |||||||| ||||| Sbjct 245663 AACCTCCAAAGTGATAGTTTTCCCAGTCAAAGTCTTGACGAAAATTTGCAT 245613 Score = 82.4 bits (90), Expect = 7e-11 Identities = 160/233 (69%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || || || ||| |||||||||||||| ||||| | Sbjct 246068 GCCACCACGGAGACGAAGGACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCTGC 246009 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | |||||| |||| || | |||||| || || || |||| | ||| ||||| | || Sbjct 246008 CAAAGTGCGCCCGTCCTCCAACTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGAGG 245949 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTC---GCTCGAC 41809 || | ||||||||| || || ||| || || | |||||| ||| | Sbjct 245948 AATTCCTTCCTTGTCCTGTATCTTAGTCTTGACATTATCG--ATAGTGTCTGAGCT---C 245894 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||||| || || ||||| || |||| ||||| || || || ||||| Sbjct 245893 TCGACCTCCAAGGTGATGGTTTTCCCAGTCAAGGTCTTAACAAATATTTGCAT 245841 >seq758 Length=475707 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || |||||||| ||||| ||||||| Sbjct 367577 CCACCACGAAGACGAAGAACAAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCGGCT 367636 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| |||| ||||||||||| |||||||| || ||||| |||||||| | || Sbjct 367637 AAAGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAAATGAGGCGTTGTTGGTCTGGTGGG 367696 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || |||| | || | ||||||| || | | | ||||| || || || Sbjct 367697 ATTCCTTCTTTGT-CTTGGATCTTTGCTTTGACATTGTCGATTGTGTCCGAGGATTCTAC 367755 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | ||||| ||||||||||| || || || ||||| |||||||| || Sbjct 367756 CTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 367806 >seq958 Length=433838 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| |||||||||||||| ||||||| Sbjct 311903 CCACCACGAAGACGAAGAACAAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCGGCT 311962 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || |||||||| || |||||||| || || || |||||||| | || Sbjct 311963 AAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGG 312022 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || || |||||| || | || |||| || | | | || || || || || Sbjct 312023 ATGCCTTCTTTGTCC-TGGATCTTGGCTTTGACATTGTCGATGGTATCCGAGGATTCGAC 312081 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || | ||||| ||||||||||| || || || ||||| |||||||| || Sbjct 312082 TTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 312132 >seq2360 Length=898569 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| |||||| || ||||||||||||||||||||| | || || || | || || Sbjct 280739 ACCAAATGCAGAGTAGACTCCTTCTGAATGTTATAGTCTGCAAGAGTCCGGCCATCCTCA 280680 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| || ||||| || || | ||| ||||| | || | | ||| || ||| Sbjct 280679 AGCTGCTTCCCTGCGAAAATAAGCCTCTGCTGGTCTGGTGGGATCCCCTCTTTATCCTGT 280620 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || ||| ||||| | | |||||| | || || |||| || ||||| || Sbjct 280619 ATCTTTGTCTTCACATTCTCAATGGTGTCGGAAGTTTCAACTTCCAAGGTAATCGTCTTG 280560 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| || || |||||||| Sbjct 280559 CCTGTCAGAGTCTTGACAAAGATCTGCAT 280531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462286588475600