Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2087 226 3e-54 seq1371 208 9e-49 >seq2087 Length=2955978 Score = 226 bits (250), Expect = 3e-54 Identities = 431/628 (69%), Gaps = 15/628 (2%) Strand=Plus/Plus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| || ||| || || || || || || || ||||||| || | ||||| || | Sbjct 718997 ACAACAGACAAGCAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGA 719056 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 24246 | || | || |||||||| ||||||||||||||||| || ||||| ||||| ||| | Sbjct 719057 AGGTTAAACCCGGCATTAGCCCACGCTTTTTAAGCCAGAAGATGGA-GCAAAAACTCCCG 719115 Query 24247 AA-AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC----CGGC 24301 | |||||||| ||||| || ||||| ||||| | || || || ||| | || Sbjct 719116 GAGAAGAAAATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCA-AACGATTCAGC 719174 Query 24302 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 24361 | ||| ||||| |||||||||| |||||||| || |||||||| || || || Sbjct 719175 ACCATCA---ATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTC 719231 Query 24362 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 24421 || ||| ||| |||| | |||| ||| |||||| | ||| || || | | ||| Sbjct 719232 AATTGCACGAAAAAGATGGGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAGAAG 719291 Query 24422 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 24481 | |||||||| || ||||||||||||||||| ||||| || || |||||| | ||| Sbjct 719292 AGAGTACATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGC 719351 Query 24482 CTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 24541 || | || ||| || ||| | |||| | | || | ||| || ||||| ||||| Sbjct 719352 TTCAGCAACCTGGACCTCTTTCATGAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTC 719411 Query 24542 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---- 24597 | || || || || || | | || | || |||| | |||||| | |||| Sbjct 719412 AGATGCGGCGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGAC 719471 Query 24598 GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 24657 | || | ||| | | | ||||| || | ||| |||||||| | ||||| ||||| | Sbjct 719472 GGTT-TCCCAGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAG 719530 Query 24658 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATC 24717 | || || ||||| ||||| | |||||| | | |||| |||||| || ||| |||| Sbjct 719531 CTTCAGCTTTTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATC 719590 Query 24718 TATTTGGATTTTTTGCAAGGATTGGTTC 24745 ||| ||| |||| || || | ||| || Sbjct 719591 TATCTGGGTTTTCTGTGAGAAGTGGGTC 719618 >seq1371 Length=8752182 Score = 208 bits (230), Expect = 9e-49 Identities = 422/619 (68%), Gaps = 13/619 (2%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || ||||| ||||| || || ||||||| || | ||||| || || || | | Sbjct 1700184 CAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAT 1700243 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 || ||||| | ||||||||||| ||||| || ||||| ||| || |||||| ||||| Sbjct 1700244 CCTGGCATCAACCCACGCTTTTTGAGCCAGAAGATGGA-GCAGAAACTTCCAGAGAAGAA 1700302 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC----CGGCGCTGTCAT 24309 ||| ||||| || ||||| ||||| | || || || ||| | || | ||| Sbjct 1700303 AATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCA-AACGATTCAGCACCATCA- 1700360 Query 24310 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 24369 ||||| |||||||||| |||||||| || |||||||| || || || || ||| Sbjct 1700361 --ATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCAC 1700418 Query 24370 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 24429 ||| |||| | |||| ||| |||||| | || || || | | |||| |||| Sbjct 1700419 GAAAAAGATGGGTTTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAGAAGAGAGTACA 1700478 Query 24430 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 24489 |||| || ||||||||||||||||| ||||| || || |||||| | ||| || | || Sbjct 1700479 TTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAA 1700538 Query 24490 TCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 24549 ||| || || | |||| | | || | ||| || || || ||||| || | Sbjct 1700539 CCTGAACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATGCGG 1700598 Query 24550 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTT--TATTCC 24606 | || || || | | || | || |||| | |||||| | ||| || | | | || Sbjct 1700599 CGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTCCC 1700658 Query 24607 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 | | | | ||||| || | ||| |||||||| | ||||| ||||| || || || | Sbjct 1700659 AGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTT 1700718 Query 24667 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGAT 24726 |||| ||||| | |||||| | | |||| |||||| || ||| ||||||| ||| | Sbjct 1700719 TTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGT 1700778 Query 24727 TTTTTGCAAGGATTGGTTC 24745 ||| || || | ||| || Sbjct 1700779 TTTCTGTGAGAAGTGGGTC 1700797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593695728581280