Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq2164 105 6e-18 seq3320 98.7 9e-16 seq1717 95.1 1e-14 seq1776 91.5 1e-13 seq2390 87.8 2e-12 seq530 82.4 7e-11 >seq2164 Length=10083965 Score = 105 bits (116), Expect = 6e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||||||||| || ||| | ||||| | ||||| |||||||| ||| ||| ||| | Sbjct 642411 AAAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATC 642470 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | | || || | | | || | || || || || |||||||| | || ||| Sbjct 642471 CTCGGACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCACCAGA 642530 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 |||||| | || ||||| || || ||||| || |||||| | ||| | |||||||| Sbjct 642531 CCAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACTTTAGCCGATTA 642590 Query 29138 CAATATTCAGAAGGAATCTACTCTTCAC 29165 ||| |||||||||||||| ||||||||| Sbjct 642591 CAACATTCAGAAGGAATCCACTCTTCAC 642618 >seq3320 Length=4692610 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/234 (70%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||| ||||| || ||| | ||||| | || || |||||||| ||| ||| ||| | Sbjct 1079516 AAAGATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTCGAATC 1079575 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | || || | | | || | || || || || |||||||| | || ||| Sbjct 1079576 ATCGGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCAGA 1079635 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 ||||||| | | |||||||| || |||||| |||||||| | ||| | || ||||| Sbjct 1079636 TCAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTA 1079695 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGGTA 29191 ||| |||||||||||||| || ||||| ||||| | ||| | || || ||||| Sbjct 1079696 CAAAATTCAGAAGGAATCGACGCTTCATCTGGTGCTTCGACTTCGTGG-GGGTA 1079748 >seq1717 Length=9716283 Score = 95.1 bits (104), Expect = 1e-14 Identities = 104/137 (76%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | || |||||||||| | | |||||||| || |||||| ||||| Sbjct 1668653 GACAAAGAAGGCATCCCACCAGATCAACAACGCTTAATCTTTGCTGGGAAACAATTGGAA 1668594 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | ||| | || |||||||| |||||||||||||| || ||||| ||||| | Sbjct 1668593 GATGGAAGAACACTTGCAGATTACAACATTCAGAAGGAATCGACGCTTCATTTGGTGCTT 1668534 Query 29175 CGATTACGAGGAGGGTA 29191 ||| | || || ||||| Sbjct 1668533 CGACTTCGTGG-GGGTA 1668518 >seq1776 Length=5111350 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||||||| |||| || ||||| || || || || || || || | Sbjct 1205089 AATGCAAATATTCGTCAAGACTTTGACTGGGAAGACGATCACTTTGGAGGTCGAGAGTTC 1205148 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | | || | ||| ||| ||| ||||| || || | ||| |||||| Sbjct 1205149 AGACACCATTGACAATGTCAAGGCAAAGATTCAAGATAAGGAGGGCATTCCCCCAGATCA 1205208 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||||| | |||||||| || || || || || ||| | || | || || ||||| Sbjct 1205209 GCAAAGGTTGATCTTTGCAGGGAAGCAGCTCGAGGATGGGAGGACCCTTGCTGACTACAA 1205268 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||| || ||||| ||||| |||||| ||||| | || ||| ||||||| Sbjct 1205269 TATCCAAAAGGAGTCTACACTTCACTTGGTGCTTCGTTTAAGAGGAGG 1205316 >seq2390 Length=8026821 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||||||||| || ||| | ||||| | ||||| |||||||| ||| || ||| | Sbjct 2843227 AAAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTAGAATC 2843168 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | | || || | | | || | || || || || |||||||| | || ||| Sbjct 2843167 CTCGGACACAATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGAATCCCACCAGA 2843108 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 |||||| | || || || || || ||||| || |||||| | ||| | ||||| || Sbjct 2843107 CCAACAACGTCTCATTTTCGCCGGAAAACAGCTCGAAGATGGCCGCACTTTAGCCGACTA 2843048 Query 29138 CAATATTCAGAAGGAATCTACTCTTCAC 29165 ||| || ||||||||||| ||||||||| Sbjct 2843047 CAACATCCAGAAGGAATCGACTCTTCAC 2843020 >seq530 Length=4616287 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| |||| || ||||| || || ||||| ||| ||| || | | Sbjct 1166065 AATGCAGATTTTCGTCAAGACCTTGACCGGAAAGACCATCACCCTCGAGGTTGAGAGCTC 1166006 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | || ||||| || ||| || || ||||| | ||| ||| || Sbjct 1166005 GGACACCATCGACAATGTTAAGGCGAAGATTCAGGACAAGGAAGGCATCCCCCCAGACCA 1165946 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || | || ||||| || || || || || ||| | ||| | || |||||||| Sbjct 1165945 GCAGAGGTTGATTTTTGCCGGGAAGCAGCTTGAGGATGGAAGGACTCTTGCGGATTACAA 1165886 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||| || ||||| || || |||||| ||||| | ||||| | ||||| Sbjct 1165885 TATCCAAAAGGAGTCAACCCTTCACTTGGTGCTCCGATTGAGGGGAGG 1165838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428317801877330