Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq3320 104 2e-17 seq2164 100 2e-16 seq1717 98.7 8e-16 seq1776 96.9 3e-15 >seq3320 Length=4692610 Score = 104 bits (114), Expect = 2e-17 Identities = 164/234 (70%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 25031 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 25090 ||| ||||| || ||| | ||||| | || || |||||||| ||| ||| ||| | Sbjct 1079516 AAAGATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTCGAATC 1079575 Query 25091 CGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 25150 | || || | | | || |||| || || || |||||||| | || ||| Sbjct 1079576 ATCGGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCAGA 1079635 Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTA 25210 ||||||| | | |||||||| || ||||||||||||||| | ||| | || ||||| Sbjct 1079636 TCAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTA 1079695 Query 25211 CAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGGTA 25264 ||| ||||| |||||||| || ||||| ||||| | ||| | || || ||||| Sbjct 1079696 CAAAATTCAGAAGGAATCGACGCTTCATCTGGTGCTTCGACTTCGTGG-GGGTA 1079748 >seq2164 Length=10083965 Score = 100 bits (110), Expect = 2e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 25031 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 25090 ||||||||| || ||| | ||||| | ||||| |||||||| ||| ||| ||| | Sbjct 642411 AAAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATC 642470 Query 25091 CGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 25150 | | || || | | | || |||| || || || |||||||| | || ||| Sbjct 642471 CTCGGACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCACCAGA 642530 Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTA 25210 |||||| | || ||||| || || ||||| | |||||| | ||| | |||||||| Sbjct 642531 CCAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACTTTAGCCGATTA 642590 Query 25211 CAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| ||||| |||||||| ||||||||| Sbjct 642591 CAACATTCAGAAGGAATCCACTCTTCAC 642618 >seq1717 Length=9716283 Score = 98.7 bits (108), Expect = 8e-16 Identities = 163/234 (70%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 25031 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 25090 ||| ||||| || ||| | ||||| | || || |||||||| ||| || ||| | Sbjct 1668750 AAATATGCAGATTTTCGTGAAAACCCTAACTGGAAAAACCATAACCTTAGAGGTCGAATC 1668691 Query 25091 CGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 25150 | || || | | | || |||| || || || |||||||| | || ||| Sbjct 1668690 ATCCGACACAATCGACAATGTCAAAATCAAGATCCAAGACAAAGAAGGCATCCCACCAGA 1668631 Query 25151 TCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTA 25210 ||||||| | | |||||||| || ||||||||||||||| | ||| | || ||||| Sbjct 1668630 TCAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTA 1668571 Query 25211 CAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGGTA 25264 ||| ||||| |||||||| || ||||| ||||| | ||| | || || ||||| Sbjct 1668570 CAACATTCAGAAGGAATCGACGCTTCATTTGGTGCTTCGACTTCGTGG-GGGTA 1668518 >seq1776 Length=5111350 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||||||| |||| || ||||| || || || || || || || | Sbjct 1205089 AATGCAAATATTCGTCAAGACTTTGACTGGGAAGACGATCACTTTGGAGGTCGAGAGTTC 1205148 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | | || ||||| ||| ||| ||||| || || | ||| |||||| Sbjct 1205149 AGACACCATTGACAATGTCAAGGCAAAGATTCAAGATAAGGAGGGCATTCCCCCAGATCA 1205208 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||| | |||||||| || || || | || ||| | || | || || ||||| Sbjct 1205209 GCAAAGGTTGATCTTTGCAGGGAAGCAGCTCGAGGATGGGAGGACCCTTGCTGACTACAA 1205268 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| |||||||| ||||| |||||| ||||| | || ||| ||||||| Sbjct 1205269 TATCCAAAAGGAGTCTACACTTCACTTGGTGCTTCGTTTAAGAGGAGG 1205316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410779347041204